Variant report

Variant	rs4711406
Chromosome Location	chr6:35133768-35133769
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:35133125..35135139-chr6:35138368..35141199,2	K562	blood:
2	chr6:35114684..35117968-chr6:35132724..35136247,4	MCF-7	breast:
3	chr6:35132585..35134492-chr6:35202340..35203841,2	MCF-7	breast:
4	chr6:34855546..34857783-chr6:35132391..35134388,2	MCF-7	breast:
5	chr6:35123069..35125917-chr6:35131448..35134859,3	K562	blood:
6	chr6:33697890..33700582-chr6:35133101..35134719,2	MCF-7	breast:
7	chr6:35131417..35136766-chr6:35169545..35174762,6	MCF-7	breast:
8	chr6:35132640..35135454-chr6:35205817..35208602,3	MCF-7	breast:
9	chr6:35127079..35138793-chr6:35145525..35157743,32	MCF-7	breast:
10	chr6:35132639..35135102-chr6:35162466..35164751,2	MCF-7	breast:
11	chr6:35126225..35131731-chr6:35132022..35136988,7	MCF-7	breast:
12	chr6:35132385..35134561-chr6:35180348..35182309,2	MCF-7	breast:
13	chr6:35132111..35134343-chr6:35165160..35168099,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000124678	Chromatin interaction
ENSG00000064999	Chromatin interaction
ENSG00000146197	Chromatin interaction
ENSG00000064995	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10456078	0.90[EUR][1000 genomes]
rs10484578	0.87[CHB][hapmap]
rs10807147	0.91[CEU][hapmap];0.81[CHB][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10807148	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10947538	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12191117	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12191184	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12191808	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12192566	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12527639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12663320	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1408256	0.87[CEU][hapmap];0.87[CHB][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1535814	0.88[CEU][hapmap];0.87[CHB][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17539666	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1886242	0.90[EUR][1000 genomes]
rs1886243	0.87[CEU][hapmap];0.87[CHB][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2181795	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3800402	0.84[CEU][hapmap];0.87[CHB][hapmap];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62404566	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62404583	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6457805	0.83[CEU][hapmap];0.89[EUR][1000 genomes]
rs6915627	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6923951	0.87[CEU][hapmap];0.87[CHB][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9296143	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9348968	0.89[EUR][1000 genomes]
rs9357195	0.89[EUR][1000 genomes]
rs9368849	0.90[EUR][1000 genomes]

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35128600-35133800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:35128600-35137400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:35128800-35137400	Weak transcription	Brain Angular Gyrus	brain
4	chr6:35130200-35136000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:35130400-35134000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:35130600-35141400	Weak transcription	Brain Substantia Nigra	brain
7	chr6:35130800-35136200	Weak transcription	Left Ventricle	heart
8	chr6:35131000-35137400	Weak transcription	Lung	lung
9	chr6:35131200-35133800	Weak transcription	Gastric	stomach
10	chr6:35131800-35134800	Enhancers	Liver	Liver
11	chr6:35131800-35135000	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr6:35132200-35134600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:35132200-35134800	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr6:35132200-35135600	Enhancers	Stomach Mucosa	stomach
15	chr6:35132400-35134800	Enhancers	Fetal Intestine Large	intestine
16	chr6:35132600-35133800	Weak transcription	Fetal Lung	lung
17	chr6:35132600-35134600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:35132600-35135000	Enhancers	Rectal Mucosa Donor 29	rectum
19	chr6:35132800-35134400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr6:35132800-35134400	Enhancers	Osteobl	bone
21	chr6:35132800-35134600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:35132800-35134800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr6:35132800-35134800	Enhancers	Muscle Satellite Cultured Cells	--
24	chr6:35132800-35134800	Enhancers	Fetal Intestine Small	intestine
25	chr6:35132800-35135000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:35133000-35134400	Enhancers	Pancreatic Islets	Pancreatic Islet
27	chr6:35133000-35134600	Enhancers	NHDF-Ad	bronchial
28	chr6:35133000-35134800	Enhancers	GM12878-XiMat	blood
29	chr6:35133200-35133800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr6:35133200-35134000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr6:35133200-35134200	Enhancers	Aorta	Aorta
32	chr6:35133200-35134200	Enhancers	Pancreas	Pancrea
33	chr6:35133200-35134400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr6:35133200-35134400	Enhancers	NHEK	skin
35	chr6:35133200-35134600	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr6:35133200-35134800	Enhancers	Adipose Nuclei	Adipose
37	chr6:35133200-35134800	Enhancers	A549	lung
38	chr6:35133200-35135000	Enhancers	Colonic Mucosa	Colon
39	chr6:35133200-35135000	Enhancers	Esophagus	oesophagus
40	chr6:35133400-35134200	Enhancers	Duodenum Mucosa	Duodenum
41	chr6:35133400-35134200	Flanking Active TSS	HepG2	liver
42	chr6:35133400-35134400	Enhancers	iPS-15b Cell Line	embryonic stem cell
43	chr6:35133400-35134600	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr6:35133400-35134600	Enhancers	HUES64 Cell Line	embryonic stem cell
45	chr6:35133400-35134800	Enhancers	Hela-S3	cervix
46	chr6:35133600-35134000	Enhancers	HUES48 Cell Line	embryonic stem cell
47	chr6:35133600-35134200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr6:35133600-35134200	Enhancers	Fetal Stomach	stomach
49	chr6:35133600-35134200	Enhancers	NH-A	brain
50	chr6:35133600-35136000	Weak transcription	Fetal Kidney	kidney

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