Variant report

Variant	rs17539666
Chromosome Location	chr6:35118390-35118391
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35116846..35119289-chr6:35140930..35142825,2	MCF-7	breast:
2	chr6:35117065..35119670-chr6:35224171..35227113,2	K562	blood:
3	chr6:35112668..35114586-chr6:35117324..35120218,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000065029	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10456078	0.90[EUR][1000 genomes]
rs10807147	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10807148	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10947538	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12191117	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12191184	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12191808	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12192566	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12527639	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12663320	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1408256	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1535814	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1886242	0.90[EUR][1000 genomes]
rs1886243	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2181795	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3800402	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4711406	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62404566	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62404583	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6457805	0.90[EUR][1000 genomes]
rs6915627	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6923951	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296143	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9348968	0.89[EUR][1000 genomes]
rs9357195	0.89[EUR][1000 genomes]
rs9368849	0.90[EUR][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35113200-35118600	Enhancers	Fetal Heart	heart
2	chr6:35114800-35119800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr6:35114800-35120000	Weak transcription	Brain Substantia Nigra	brain
4	chr6:35115200-35119400	Weak transcription	Brain Hippocampus Middle	brain
5	chr6:35115200-35119800	Weak transcription	Brain Anterior Caudate	brain
6	chr6:35116000-35119600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:35116600-35120000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr6:35116800-35118400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr6:35116800-35119400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:35116800-35119400	Weak transcription	HMEC	breast
11	chr6:35116800-35119600	Weak transcription	HSMM	muscle
12	chr6:35116800-35120000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:35116800-35121600	Weak transcription	GM12878-XiMat	blood
14	chr6:35116800-35129200	Weak transcription	Aorta	Aorta
15	chr6:35117000-35118400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:35117000-35119400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:35117000-35119600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:35117000-35119600	Weak transcription	NH-A	brain
19	chr6:35117000-35119800	Weak transcription	NHEK	skin
20	chr6:35117000-35120400	Weak transcription	A549	lung
21	chr6:35117400-35119200	Weak transcription	Osteobl	bone
22	chr6:35117600-35119200	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr6:35117600-35119400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr6:35117800-35120000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:35118000-35118400	Bivalent Enhancer	Fetal Stomach	stomach
26	chr6:35118000-35118600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:35118000-35118600	Active TSS	K562	blood
28	chr6:35118000-35120000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr6:35118000-35120000	Weak transcription	NHDF-Ad	bronchial
30	chr6:35118200-35118400	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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