Variant report

Variant	rs10456078
Chromosome Location	chr6:35118075-35118076
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:10)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:10 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF1	chr6:35117893-35118370	K562	blood:	n/a	n/a
2	USF1	chr6:35117987-35118290	H1-hESC	embryonic stem cell:	n/a	n/a
3	USF1	chr6:35117856-35118380	K562	blood:	n/a	n/a
4	NFYB	chr6:35117813-35118363	K562	blood:	n/a	n/a
5	MAX	chr6:35118052-35118200	K562	blood:	n/a	n/a
6	USF2	chr6:35118008-35118221	K562	blood:	n/a	n/a
7	USF2	chr6:35118065-35118311	H1-hESC	embryonic stem cell:	n/a	n/a
8	USF1	chr6:35117897-35118353	H1-hESC	embryonic stem cell:	n/a	n/a
9	NFYA	chr6:35117929-35118325	K562	blood:	n/a	chr6:35118097-35118115
10	FOS	chr6:35117948-35118285	K562	blood:	n/a	chr6:35118269-35118283

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:35116601..35118172-chr6:35173986..35176309,2	MCF-7	breast:
2	chr6:35116846..35119289-chr6:35140930..35142825,2	MCF-7	breast:
3	chr6:35117065..35119670-chr6:35224171..35227113,2	K562	blood:
4	chr6:35112668..35114586-chr6:35117324..35120218,2	MCF-7	breast:

No data

Variant related genes	Relation type
TCP11	TF binding region
ENSG00000065029	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10807147	0.90[EUR][1000 genomes]
rs10807148	0.90[EUR][1000 genomes]
rs12191808	0.85[EUR][1000 genomes]
rs12192566	0.90[EUR][1000 genomes]
rs12527639	0.90[EUR][1000 genomes]
rs12663320	0.85[EUR][1000 genomes]
rs1408256	0.90[EUR][1000 genomes]
rs1535814	0.90[EUR][1000 genomes]
rs17539666	0.90[EUR][1000 genomes]
rs1886242	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1886243	0.89[EUR][1000 genomes]
rs2038740	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2181795	0.85[EUR][1000 genomes]
rs4711404	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4711406	0.90[EUR][1000 genomes]
rs62404566	0.89[EUR][1000 genomes]
rs62404583	0.90[EUR][1000 genomes]
rs6457805	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6904920	0.94[ASN][1000 genomes]
rs6915627	0.84[EUR][1000 genomes]
rs6923951	0.89[EUR][1000 genomes]
rs7764636	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9296143	0.89[EUR][1000 genomes]
rs9348967	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9348968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9357195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9394274	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35113200-35118600	Enhancers	Fetal Heart	heart
2	chr6:35114800-35119800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr6:35114800-35120000	Weak transcription	Brain Substantia Nigra	brain
4	chr6:35115200-35119400	Weak transcription	Brain Hippocampus Middle	brain
5	chr6:35115200-35119800	Weak transcription	Brain Anterior Caudate	brain
6	chr6:35116000-35119600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:35116600-35120000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr6:35116800-35118400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr6:35116800-35119400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:35116800-35119400	Weak transcription	HMEC	breast
11	chr6:35116800-35119600	Weak transcription	HSMM	muscle
12	chr6:35116800-35120000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:35116800-35121600	Weak transcription	GM12878-XiMat	blood
14	chr6:35116800-35129200	Weak transcription	Aorta	Aorta
15	chr6:35117000-35118400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:35117000-35119400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:35117000-35119600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:35117000-35119600	Weak transcription	NH-A	brain
19	chr6:35117000-35119800	Weak transcription	NHEK	skin
20	chr6:35117000-35120400	Weak transcription	A549	lung
21	chr6:35117400-35119200	Weak transcription	Osteobl	bone
22	chr6:35117600-35119200	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr6:35117600-35119400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr6:35117800-35120000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:35118000-35118400	Bivalent Enhancer	Fetal Stomach	stomach
26	chr6:35118000-35118600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:35118000-35118600	Active TSS	K562	blood
28	chr6:35118000-35120000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr6:35118000-35120000	Weak transcription	NHDF-Ad	bronchial

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