Variant report

Variant	rs9348967
Chromosome Location	chr6:35117235-35117236
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr6:35115953-35117579	IMR90	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:35116601..35118172-chr6:35173986..35176309,2	MCF-7	breast:
2	chr6:35116846..35119289-chr6:35140930..35142825,2	MCF-7	breast:
3	chr6:35117065..35119670-chr6:35224171..35227113,2	K562	blood:

Variant related genes	Relation type
TCP11	TF binding region
ENSG00000065029	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10456078	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10947538	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs12191117	0.86[EUR][1000 genomes]
rs12191184	0.88[EUR][1000 genomes]
rs16872293	0.83[YRI][hapmap]
rs1886242	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2038740	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4711404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6457804	0.91[CEU][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6457805	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6904920	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7764636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9348968	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9357195	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9368849	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9394274	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9348967	TCP11	cis	multi-tissue	Pritchard

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35113200-35118600	Enhancers	Fetal Heart	heart
2	chr6:35113800-35117400	Enhancers	Osteobl	bone
3	chr6:35113800-35117600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:35113800-35117600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:35114000-35118000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:35114400-35117400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:35114800-35119800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr6:35114800-35120000	Weak transcription	Brain Substantia Nigra	brain
9	chr6:35115200-35117400	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr6:35115200-35119400	Weak transcription	Brain Hippocampus Middle	brain
11	chr6:35115200-35119800	Weak transcription	Brain Anterior Caudate	brain
12	chr6:35116000-35117600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
13	chr6:35116000-35119600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:35116400-35118000	Enhancers	NHDF-Ad	bronchial
15	chr6:35116600-35117800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:35116600-35120000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:35116800-35117600	Enhancers	Muscle Satellite Cultured Cells	--
18	chr6:35116800-35118000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr6:35116800-35118400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr6:35116800-35119400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:35116800-35119400	Weak transcription	HMEC	breast
22	chr6:35116800-35119600	Weak transcription	HSMM	muscle
23	chr6:35116800-35120000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr6:35116800-35121600	Weak transcription	GM12878-XiMat	blood
25	chr6:35116800-35129200	Weak transcription	Aorta	Aorta
26	chr6:35117000-35117400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
27	chr6:35117000-35118400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr6:35117000-35119400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr6:35117000-35119600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr6:35117000-35119600	Weak transcription	NH-A	brain
31	chr6:35117000-35119800	Weak transcription	NHEK	skin
32	chr6:35117000-35120400	Weak transcription	A549	lung

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