Variant report

Variant	rs4711404
Chromosome Location	chr6:35124480-35124481
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10456078	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10947538	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12191117	0.87[EUR][1000 genomes]
rs12191184	0.89[EUR][1000 genomes]
rs16872293	0.85[YRI][hapmap]
rs1886242	1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2038740	0.87[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6457804	0.88[ASW][hapmap];0.91[CEU][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6457805	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6904920	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6915627	0.80[EUR][1000 genomes]
rs7764636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9348967	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9348968	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9357195	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9368849	1.00[CHB][hapmap];0.98[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9394274	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs4711404	MLN	cis	parietal	SCAN
rs4711404	GRM4	cis	cerebellum	SCAN
rs4711404	HCK	trans	lymphoblastoid	seeQTL
rs4711404	NUDT3	cis	parietal	SCAN
rs4711404	TCP11	cis	multi-tissue	Pritchard

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35116800-35129200	Weak transcription	Aorta	Aorta
2	chr6:35118600-35132200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:35123000-35125200	Weak transcription	NHDF-Ad	bronchial
4	chr6:35123400-35126200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:35123400-35127600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:35123800-35129000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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