Variant report

Variant	rs10807148
Chromosome Location	chr6:35129288-35129289
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35118855..35121667-chr6:35128574..35130894,2	MCF-7	breast:
2	chr6:35124633..35127354-chr6:35127421..35129351,2	MCF-7	breast:
3	chr6:35127079..35138793-chr6:35145525..35157743,32	MCF-7	breast:
4	chr6:35126225..35131731-chr6:35132022..35136988,7	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ANKS1A-1	chr6:35127447-35132003	ENSG00000244904

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10456078	0.90[EUR][1000 genomes]
rs10484578	0.92[CEU][hapmap]
rs10807147	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10947538	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12191117	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12191184	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12191808	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12192566	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12527639	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12663320	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1408256	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1535814	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17539666	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1886242	0.91[CEU][hapmap];0.90[EUR][1000 genomes]
rs1886243	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2038740	0.83[CEU][hapmap]
rs2181795	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3800402	0.96[CEU][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4711406	0.87[CEU][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62404566	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62404583	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457805	0.91[CEU][hapmap];0.90[EUR][1000 genomes]
rs6915627	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6923951	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9296143	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9348968	0.89[EUR][1000 genomes]
rs9357195	0.89[EUR][1000 genomes]
rs9368849	0.91[CEU][hapmap];0.90[EUR][1000 genomes]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35118600-35132200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:35126200-35129600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:35127400-35129400	Enhancers	Liver	Liver
4	chr6:35127600-35130600	Enhancers	Adipose Nuclei	Adipose
5	chr6:35127600-35130800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:35128200-35129800	Weak transcription	Pancreas	Pancrea
7	chr6:35128200-35130000	Enhancers	Fetal Stomach	stomach
8	chr6:35128200-35130400	Enhancers	Fetal Kidney	kidney
9	chr6:35128200-35130400	Enhancers	HUVEC	blood vessel
10	chr6:35128400-35129800	Weak transcription	Fetal Lung	lung
11	chr6:35128600-35129600	Enhancers	HepG2	liver
12	chr6:35128600-35129800	Weak transcription	Lung	lung
13	chr6:35128600-35130200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr6:35128600-35130800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:35128600-35130800	Weak transcription	Right Atrium	heart
16	chr6:35128600-35130800	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr6:35128600-35133200	Weak transcription	Esophagus	oesophagus
18	chr6:35128600-35133800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr6:35128600-35137400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr6:35128800-35129400	Enhancers	Fetal Muscle Leg	muscle
21	chr6:35128800-35130400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr6:35128800-35137400	Weak transcription	Brain Angular Gyrus	brain
23	chr6:35129000-35129800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr6:35129000-35130600	Enhancers	Stomach Mucosa	stomach
25	chr6:35129000-35130600	Enhancers	NHDF-Ad	bronchial
26	chr6:35129200-35130200	Enhancers	Aorta	Aorta
27	chr6:35129200-35130600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr6:35129200-35130600	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr6:35129200-35130600	Weak transcription	Spleen	Spleen
30	chr6:35129200-35130600	Enhancers	Osteobl	bone
31	chr6:35129200-35133200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links