Variant report

Variant	rs12663320
Chromosome Location	chr6:35121366-35121367
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35119907..35121608-chr6:35130081..35132531,2	MCF-7	breast:
2	chr6:35119279..35121537-chr6:35147804..35149813,2	K562	blood:
3	chr6:35118855..35121667-chr6:35128574..35130894,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10456078	0.85[EUR][1000 genomes]
rs10807147	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10807148	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10947538	0.92[ASN][1000 genomes]
rs12191117	0.92[ASN][1000 genomes]
rs12191184	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12191808	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12192566	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12527639	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1408256	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1535814	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17539666	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1886242	0.85[EUR][1000 genomes]
rs1886243	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2181795	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3800402	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4711406	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62404566	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62404583	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6457805	0.85[EUR][1000 genomes]
rs6915627	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6923951	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9296143	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9348968	0.84[EUR][1000 genomes]
rs9357195	0.84[EUR][1000 genomes]
rs9368849	0.85[EUR][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35116800-35121600	Weak transcription	GM12878-XiMat	blood
2	chr6:35116800-35129200	Weak transcription	Aorta	Aorta
3	chr6:35118600-35132200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:35119200-35123600	Enhancers	Osteobl	bone
5	chr6:35119200-35123800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr6:35119400-35123800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:35119600-35121600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:35120000-35123000	Enhancers	NHDF-Ad	bronchial
9	chr6:35120000-35123400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:35120400-35121800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:35121200-35121400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:35121200-35122200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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