Variant report

Variant	rs2395660
Chromosome Location	chr6:36666827-36666828
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36561573..36563528-chr6:36666285..36668118,2	K562	blood:
2	chr6:36644113..36646429-chr6:36664735..36667230,2	K562	blood:
3	chr6:36560848..36563528-chr6:36666618..36669519,2	K562	blood:
4	chr6:36662298..36665035-chr6:36665168..36667578,2	MCF-7	breast:
5	chr6:36664831..36667181-chr6:36668098..36669647,2	MCF-7	breast:
6	chr6:36658841..36660500-chr6:36665313..36667930,3	MCF-7	breast:
7	chr6:36665939..36668161-chr6:36669239..36671316,2	MCF-7	breast:
8	chr6:36650715..36656032-chr6:36664945..36667924,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000124762	Chromatin interaction
ENSG00000112081	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11750955	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11750982	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753407	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12176359	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1972291	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2395657	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2894409	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35442158	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72853397	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7756867	0.92[CHB][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs9349006	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9349007	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9368955	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9380589	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9380590	1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9380591	0.80[EUR][1000 genomes]
rs9380592	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9394373	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9394374	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9394376	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031191	chr6:36588974-36718015	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv538201	chr6:36588974-36718015	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv885808	chr6:36659932-36684518	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3343209	chr6:36663774-36668072	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36655000-36672000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:36655200-36669400	Weak transcription	Gastric	stomach
3	chr6:36661000-36667000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr6:36661200-36668600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:36661400-36696400	Weak transcription	Right Atrium	heart
6	chr6:36664800-36668600	Weak transcription	Primary B cells from peripheral blood	blood
7	chr6:36665200-36667000	Enhancers	Primary hematopoietic stem cells	blood
8	chr6:36665200-36667000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:36665200-36667000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
10	chr6:36665200-36667800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr6:36665400-36669400	Weak transcription	Spleen	Spleen
12	chr6:36665600-36667000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
13	chr6:36665800-36667800	Enhancers	Fetal Intestine Small	intestine
14	chr6:36666000-36667200	Enhancers	Stomach Mucosa	stomach
15	chr6:36666000-36667800	Enhancers	Fetal Intestine Large	intestine
16	chr6:36666000-36669000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr6:36666400-36667800	Enhancers	Fetal Heart	heart
18	chr6:36666600-36667400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr6:36666600-36670800	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr6:36666600-36671000	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr6:36666800-36667000	Bivalent Enhancer	K562	blood
22	chr6:36666800-36668000	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr6:36666800-36670000	Enhancers	Primary B cells from cord blood	blood

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