Variant report

Variant	rs9349007
Chromosome Location	chr6:36693016-36693017
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36692637..36694151-chr6:36698641..36700541,2	MCF-7	breast:
2	chr6:36692374..36694188-chr6:36726056..36729043,2	MCF-7	breast:
3	chr6:36582828..36583431-chr6:36692525..36693052,2	MCF-7	breast:
4	chr6:36633980..36636533-chr6:36690989..36693316,2	MCF-7	breast:
5	chr6:36571240..36574099-chr6:36691059..36693876,2	K562	blood:
6	chr6:36626473..36628728-chr6:36691772..36694267,2	MCF-7	breast:
7	chr6:36692850..36695107-chr6:36695196..36696719,2	MCF-7	breast:
8	chr6:36689656..36693910-chr6:36696758..36700115,6	K562	blood:
9	chr6:36692117..36693169-chr6:36726597..36727520,3	MCF-7	breast:
10	chr6:36591305..36591878-chr6:36692059..36693073,8	K562	blood:
11	chr6:36581615..36586295-chr6:36690989..36695468,6	MCF-7	breast:
12	chr6:36590968..36593681-chr6:36692597..36695208,2	MCF-7	breast:
13	chr6:36692869..36694899-chr6:36700775..36703080,2	MCF-7	breast:
14	chr6:36655048..36657495-chr6:36690151..36694122,3	MCF-7	breast:
15	chr6:36611017..36614815-chr6:36692624..36695371,3	K562	blood:

No data

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11750955	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11750982	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11753407	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12176359	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12526332	0.83[ASN][1000 genomes]
rs1972291	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2395657	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2395660	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2894409	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs35442158	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs72853397	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7756867	0.94[ASN][1000 genomes]
rs9349006	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380589	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9380590	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9380591	0.84[ASN][1000 genomes]
rs9380592	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9394373	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9394374	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9394376	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031191	chr6:36588974-36718015	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv538201	chr6:36588974-36718015	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv885809	chr6:36687518-36719079	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36661400-36696400	Weak transcription	Right Atrium	heart
2	chr6:36671800-36694000	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr6:36672200-36693600	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr6:36677000-36694000	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr6:36683800-36695200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr6:36688400-36702200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr6:36689200-36702400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:36689800-36693600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:36689800-36696600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:36690000-36693800	Weak transcription	Fetal Heart	heart
11	chr6:36690400-36696400	Weak transcription	Spleen	Spleen
12	chr6:36690400-36702600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr6:36690600-36695200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr6:36690800-36695400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr6:36691000-36695200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:36691200-36694400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:36691200-36695200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:36691200-36695200	Weak transcription	HMEC	breast
19	chr6:36691200-36695200	Weak transcription	NHEK	skin
20	chr6:36692000-36696600	Enhancers	Primary B cells from peripheral blood	blood
21	chr6:36692400-36693800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr6:36692400-36694000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:36692400-36694000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr6:36692400-36694200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr6:36692400-36697000	Enhancers	Primary B cells from cord blood	blood
26	chr6:36692600-36693600	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr6:36692600-36693600	Enhancers	Fetal Muscle Leg	muscle
28	chr6:36692600-36693800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr6:36692600-36699000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr6:36692800-36695400	Weak transcription	Stomach Mucosa	stomach
31	chr6:36693000-36696800	Enhancers	GM12878-XiMat	blood

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