Variant report

Variant	rs239940
Chromosome Location	chr19:44380931-44380932
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11555891	1.00[ASW][hapmap]
rs16976816	1.00[JPT][hapmap]
rs16976817	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv458710	chr19:44339960-44410846	Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv579853	chr19:44339960-44410846	ZNF genes & repeats Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv912108	chr19:44358761-44435167	ZNF genes & repeats Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv961294	chr19:44359970-44384503	ZNF genes & repeats Weak transcription Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44371200-44381600	ZNF genes & repeats	Adipose Nuclei	Adipose
2	chr19:44371200-44381600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
3	chr19:44371800-44381400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr19:44371800-44381600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr19:44373400-44381600	ZNF genes & repeats	Liver	Liver
6	chr19:44375600-44381600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr19:44376800-44381800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr19:44378800-44382600	Weak transcription	Ovary	ovary
9	chr19:44379600-44382600	Weak transcription	Fetal Brain Male	brain
10	chr19:44380400-44381800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr19:44380600-44381400	ZNF genes & repeats	Brain Hippocampus Middle	brain
12	chr19:44380800-44381000	ZNF genes & repeats	Fetal Lung	lung
13	chr19:44380800-44381200	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
14	chr19:44380800-44381200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
15	chr19:44380800-44381400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
16	chr19:44380800-44381400	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
17	chr19:44380800-44381400	ZNF genes & repeats	Stomach Smooth Muscle	stomach
18	chr19:44380800-44381600	ZNF genes & repeats	Brain Angular Gyrus	brain
19	chr19:44380800-44381600	ZNF genes & repeats	Brain Anterior Caudate	brain
20	chr19:44380800-44381600	ZNF genes & repeats	Brain Substantia Nigra	brain
21	chr19:44380800-44381600	ZNF genes & repeats	Colon Smooth Muscle	Colon

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