Variant report

Variant	rs2401611
Chromosome Location	chr12:10262400-10262401
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10772234	0.80[ASN][1000 genomes]
rs10845037	0.80[ASN][1000 genomes]
rs10845038	0.80[ASN][1000 genomes]
rs10845039	0.80[ASN][1000 genomes]
rs10845040	0.80[ASN][1000 genomes]
rs10845041	0.81[ASN][1000 genomes]
rs11053577	0.81[ASN][1000 genomes]
rs11053578	0.80[ASN][1000 genomes]
rs11053579	0.80[ASN][1000 genomes]
rs11053580	0.80[ASN][1000 genomes]
rs11053581	0.81[ASN][1000 genomes]
rs12370211	0.80[ASN][1000 genomes]
rs12372259	0.80[ASN][1000 genomes]
rs12372577	0.80[ASN][1000 genomes]
rs2087304	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2087305	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2087306	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2087307	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2306891	0.81[ASN][1000 genomes]
rs2306892	0.81[ASN][1000 genomes]
rs2306893	0.81[ASN][1000 genomes]
rs2306894	0.80[ASN][1000 genomes]
rs2401600	0.83[ASN][1000 genomes]
rs2401601	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2401602	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2401603	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2401604	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2401605	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2401606	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2401607	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3816845	0.80[ASN][1000 genomes]
rs3912644	0.80[ASN][1000 genomes]
rs3912645	0.80[ASN][1000 genomes]
rs4764247	0.80[ASN][1000 genomes]
rs4764248	0.80[ASN][1000 genomes]
rs4764249	0.80[ASN][1000 genomes]
rs4764250	0.80[ASN][1000 genomes]
rs4764251	0.80[ASN][1000 genomes]
rs6416263	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6488256	0.80[ASN][1000 genomes]
rs6488257	0.80[ASN][1000 genomes]
rs6488258	0.81[ASN][1000 genomes]
rs6488259	0.81[ASN][1000 genomes]
rs7313750	0.80[ASN][1000 genomes]
rs7956208	0.80[ASN][1000 genomes]
rs7956327	0.80[ASN][1000 genomes]
rs7957278	0.80[ASN][1000 genomes]
rs7970083	0.80[ASN][1000 genomes]
rs7972187	0.80[ASN][1000 genomes]
rs7977902	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10255800-10264200	Weak transcription	Monocytes-CD14+_RO01746	blood

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