Variant report

Variant	rs2401603
Chromosome Location	chr12:10263139-10263140
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10772231	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10772234	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10845035	0.95[ASN][1000 genomes]
rs10845037	0.95[ASN][1000 genomes]
rs10845038	0.95[ASN][1000 genomes]
rs10845039	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10845040	0.95[ASN][1000 genomes]
rs10845041	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11053577	0.95[ASN][1000 genomes]
rs11053578	0.95[ASN][1000 genomes]
rs11053579	0.95[ASN][1000 genomes]
rs11053580	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11053581	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11053589	0.82[CEU][hapmap];0.90[CHB][hapmap]
rs12300167	0.95[ASN][1000 genomes]
rs12370211	0.95[ASN][1000 genomes]
rs12372259	0.95[ASN][1000 genomes]
rs12372577	0.95[ASN][1000 genomes]
rs1352477	0.95[ASN][1000 genomes]
rs1387140	0.95[ASN][1000 genomes]
rs1948184	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1948185	0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs2087304	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2087305	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2087306	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2087307	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2220436	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2277416	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2306891	0.96[ASN][1000 genomes]
rs2306892	0.96[ASN][1000 genomes]
rs2306893	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2306894	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2401600	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2401601	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2401602	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2401604	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2401605	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2401606	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2401607	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2401611	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2401614	0.95[ASN][1000 genomes]
rs2401615	0.95[ASN][1000 genomes]
rs2401616	0.95[ASN][1000 genomes]
rs3816845	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3825300	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3886137	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3886143	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs3887490	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3912644	0.95[ASN][1000 genomes]
rs3912645	0.95[ASN][1000 genomes]
rs3994131	0.95[ASN][1000 genomes]
rs3994132	0.95[ASN][1000 genomes]
rs4265666	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4499082	0.95[ASN][1000 genomes]
rs4595634	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4764247	0.95[ASN][1000 genomes]
rs4764248	0.95[ASN][1000 genomes]
rs4764249	0.95[ASN][1000 genomes]
rs4764250	0.95[ASN][1000 genomes]
rs4764251	0.95[ASN][1000 genomes]
rs5012088	0.95[ASN][1000 genomes]
rs6416262	0.95[ASN][1000 genomes]
rs6416263	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6488249	0.95[ASN][1000 genomes]
rs6488250	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6488252	0.95[ASN][1000 genomes]
rs6488254	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6488256	0.95[ASN][1000 genomes]
rs6488257	0.95[ASN][1000 genomes]
rs6488258	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6488259	0.96[ASN][1000 genomes]
rs6488261	0.89[ASN][1000 genomes]
rs7313750	0.95[ASN][1000 genomes]
rs7956208	0.95[ASN][1000 genomes]
rs7956327	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7957278	0.95[ASN][1000 genomes]
rs7960611	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7962246	0.95[ASN][1000 genomes]
rs7962341	0.95[ASN][1000 genomes]
rs7970083	0.95[ASN][1000 genomes]
rs7972187	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7974909	0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs7976945	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7977902	0.95[ASN][1000 genomes]
rs7979762	0.95[ASN][1000 genomes]
rs7980801	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs952545	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs952546	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10255800-10264200	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr12:10262800-10263200	Enhancers	Liver	Liver

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