Variant report

Variant	rs6488261
Chromosome Location	chr12:10266090-10266091
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:10265365..10267011-chr12:10359911..10362410,2	K562	blood:

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10772231	0.87[ASN][1000 genomes]
rs10772234	0.88[ASN][1000 genomes]
rs10845035	0.87[ASN][1000 genomes]
rs10845037	0.88[ASN][1000 genomes]
rs10845038	0.88[ASN][1000 genomes]
rs10845039	0.88[ASN][1000 genomes]
rs10845040	0.88[ASN][1000 genomes]
rs10845041	0.88[ASN][1000 genomes]
rs11053577	0.87[ASN][1000 genomes]
rs11053578	0.88[ASN][1000 genomes]
rs11053579	0.88[ASN][1000 genomes]
rs11053580	0.88[ASN][1000 genomes]
rs11053581	0.88[ASN][1000 genomes]
rs12300167	0.87[ASN][1000 genomes]
rs12370211	0.88[ASN][1000 genomes]
rs12372259	0.88[ASN][1000 genomes]
rs12372577	0.88[ASN][1000 genomes]
rs1352477	0.87[ASN][1000 genomes]
rs1387140	0.87[ASN][1000 genomes]
rs1948184	0.84[ASN][1000 genomes]
rs1948185	0.85[ASN][1000 genomes]
rs2087304	0.87[ASN][1000 genomes]
rs2087305	0.86[ASN][1000 genomes]
rs2087306	0.83[ASN][1000 genomes]
rs2087307	0.91[ASN][1000 genomes]
rs2220436	0.86[ASN][1000 genomes]
rs2277416	0.87[ASN][1000 genomes]
rs2306891	0.88[ASN][1000 genomes]
rs2306892	0.88[ASN][1000 genomes]
rs2306893	0.88[ASN][1000 genomes]
rs2306894	0.88[ASN][1000 genomes]
rs2401600	0.91[ASN][1000 genomes]
rs2401601	0.91[ASN][1000 genomes]
rs2401602	0.89[ASN][1000 genomes]
rs2401603	0.89[ASN][1000 genomes]
rs2401604	0.91[ASN][1000 genomes]
rs2401605	0.91[ASN][1000 genomes]
rs2401606	0.91[ASN][1000 genomes]
rs2401607	0.91[ASN][1000 genomes]
rs2401614	0.87[ASN][1000 genomes]
rs2401615	0.87[ASN][1000 genomes]
rs2401616	0.87[ASN][1000 genomes]
rs3816845	0.88[ASN][1000 genomes]
rs3825300	0.87[ASN][1000 genomes]
rs3886137	0.87[ASN][1000 genomes]
rs3887490	0.87[ASN][1000 genomes]
rs3912644	0.88[ASN][1000 genomes]
rs3912645	0.88[ASN][1000 genomes]
rs3994131	0.87[ASN][1000 genomes]
rs3994132	0.87[ASN][1000 genomes]
rs4265666	0.87[ASN][1000 genomes]
rs4499082	0.87[ASN][1000 genomes]
rs4595634	0.86[ASN][1000 genomes]
rs4764247	0.88[ASN][1000 genomes]
rs4764248	0.88[ASN][1000 genomes]
rs4764249	0.88[ASN][1000 genomes]
rs4764250	0.88[ASN][1000 genomes]
rs4764251	0.88[ASN][1000 genomes]
rs5012088	0.87[ASN][1000 genomes]
rs6416262	0.87[ASN][1000 genomes]
rs6416263	0.91[ASN][1000 genomes]
rs6488249	0.87[ASN][1000 genomes]
rs6488250	0.87[ASN][1000 genomes]
rs6488252	0.87[ASN][1000 genomes]
rs6488254	0.87[ASN][1000 genomes]
rs6488256	0.88[ASN][1000 genomes]
rs6488257	0.88[ASN][1000 genomes]
rs6488258	0.88[ASN][1000 genomes]
rs6488259	0.88[ASN][1000 genomes]
rs7313750	0.88[ASN][1000 genomes]
rs7956208	0.88[ASN][1000 genomes]
rs7956327	0.88[ASN][1000 genomes]
rs7957278	0.88[ASN][1000 genomes]
rs7960611	0.85[ASN][1000 genomes]
rs7962246	0.87[ASN][1000 genomes]
rs7962341	0.87[ASN][1000 genomes]
rs7970083	0.88[ASN][1000 genomes]
rs7970859	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7971593	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7972187	0.88[ASN][1000 genomes]
rs7974909	0.84[ASN][1000 genomes]
rs7976945	0.87[ASN][1000 genomes]
rs7977902	0.88[ASN][1000 genomes]
rs7979762	0.87[ASN][1000 genomes]
rs7980801	0.87[ASN][1000 genomes]
rs952545	0.87[ASN][1000 genomes]
rs952546	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10264200-10275600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:10264600-10281000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr12:10264800-10266400	Enhancers	Hela-S3	cervix
4	chr12:10264800-10268000	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr12:10265200-10268000	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr12:10265400-10267800	Weak transcription	Primary monocytes fromperipheralblood	blood

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