Variant report

Variant	rs2401601
Chromosome Location	chr12:10263205-10263206
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr12:10263160-10263310	Caco-2	colon:	n/a	n/a

Variant related genes	Relation type
HNRNPABP1	TF binding region

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10772231	0.96[ASN][1000 genomes]
rs10772234	0.97[ASN][1000 genomes]
rs10845035	0.96[ASN][1000 genomes]
rs10845037	0.97[ASN][1000 genomes]
rs10845038	0.97[ASN][1000 genomes]
rs10845039	0.97[ASN][1000 genomes]
rs10845040	0.97[ASN][1000 genomes]
rs10845041	0.98[ASN][1000 genomes]
rs11053577	0.96[ASN][1000 genomes]
rs11053578	0.97[ASN][1000 genomes]
rs11053579	0.97[ASN][1000 genomes]
rs11053580	0.97[ASN][1000 genomes]
rs11053581	0.98[ASN][1000 genomes]
rs12300167	0.96[ASN][1000 genomes]
rs12370211	0.97[ASN][1000 genomes]
rs12372259	0.97[ASN][1000 genomes]
rs12372577	0.97[ASN][1000 genomes]
rs1352477	0.96[ASN][1000 genomes]
rs1387140	0.96[ASN][1000 genomes]
rs1948184	0.93[ASN][1000 genomes]
rs1948185	0.94[ASN][1000 genomes]
rs2087304	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2087305	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2087306	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2087307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2220436	0.95[ASN][1000 genomes]
rs2277416	0.96[ASN][1000 genomes]
rs2306891	0.98[ASN][1000 genomes]
rs2306892	0.98[ASN][1000 genomes]
rs2306893	0.98[ASN][1000 genomes]
rs2306894	0.97[ASN][1000 genomes]
rs2401600	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2401602	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2401603	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2401604	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2401605	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2401606	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2401607	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2401611	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2401614	0.96[ASN][1000 genomes]
rs2401615	0.96[ASN][1000 genomes]
rs2401616	0.96[ASN][1000 genomes]
rs3816845	0.97[ASN][1000 genomes]
rs3825300	0.96[ASN][1000 genomes]
rs3886137	0.96[ASN][1000 genomes]
rs3887490	0.96[ASN][1000 genomes]
rs3912644	0.97[ASN][1000 genomes]
rs3912645	0.97[ASN][1000 genomes]
rs3994131	0.96[ASN][1000 genomes]
rs3994132	0.96[ASN][1000 genomes]
rs4265666	0.96[ASN][1000 genomes]
rs4499082	0.96[ASN][1000 genomes]
rs4595634	0.95[ASN][1000 genomes]
rs4764247	0.97[ASN][1000 genomes]
rs4764248	0.97[ASN][1000 genomes]
rs4764249	0.97[ASN][1000 genomes]
rs4764250	0.97[ASN][1000 genomes]
rs4764251	0.97[ASN][1000 genomes]
rs5012088	0.96[ASN][1000 genomes]
rs6416262	0.96[ASN][1000 genomes]
rs6416263	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6488249	0.96[ASN][1000 genomes]
rs6488250	0.96[ASN][1000 genomes]
rs6488252	0.96[ASN][1000 genomes]
rs6488254	0.96[ASN][1000 genomes]
rs6488256	0.97[ASN][1000 genomes]
rs6488257	0.97[ASN][1000 genomes]
rs6488258	0.98[ASN][1000 genomes]
rs6488259	0.98[ASN][1000 genomes]
rs6488261	0.91[ASN][1000 genomes]
rs7313750	0.97[ASN][1000 genomes]
rs7956208	0.97[ASN][1000 genomes]
rs7956327	0.97[ASN][1000 genomes]
rs7957278	0.97[ASN][1000 genomes]
rs7960611	0.94[ASN][1000 genomes]
rs7962246	0.96[ASN][1000 genomes]
rs7962341	0.96[ASN][1000 genomes]
rs7970083	0.97[ASN][1000 genomes]
rs7972187	0.97[ASN][1000 genomes]
rs7974909	0.93[ASN][1000 genomes]
rs7976945	0.96[ASN][1000 genomes]
rs7977902	0.97[ASN][1000 genomes]
rs7979762	0.96[ASN][1000 genomes]
rs7980801	0.96[ASN][1000 genomes]
rs952545	0.96[ASN][1000 genomes]
rs952546	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10255800-10264200	Weak transcription	Monocytes-CD14+_RO01746	blood

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