The 2.0 version of rSNPBase

Variant report

Variant rs2404860
Chromosome Location chr1:224512391-224512392
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:120 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:224433400-224516200 Weak transcription Fetal Heart heart
2 chr1:224482800-224517000 Weak transcription ES-WA7 Cell Line embryonic stem cell
3 chr1:224483800-224517200 Weak transcription Small Intestine intestine
4 chr1:224487400-224515600 Weak transcription Psoas Muscle Psoas
5 chr1:224491800-224515600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
6 chr1:224491800-224516200 Weak transcription Fetal Brain Male brain
7 chr1:224491800-224516400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
8 chr1:224491800-224516600 Weak transcription Rectal Smooth Muscle rectum
9 chr1:224492000-224513400 Weak transcription Lung lung
10 chr1:224492400-224516400 Weak transcription Placenta Amnion Placenta Amnion
11 chr1:224493200-224514400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
12 chr1:224495200-224515600 Weak transcription iPS-15b Cell Line embryonic stem cell
13 chr1:224495400-224516600 Weak transcription Esophagus oesophagus
14 chr1:224495400-224516800 Weak transcription ES-I3 Cell Line embryonic stem cell
15 chr1:224496000-224515400 Weak transcription Colon Smooth Muscle Colon
16 chr1:224496000-224515600 Weak transcription Primary T killer memory cells from peripheral blood blood
17 chr1:224496000-224516200 Weak transcription Brain Substantia Nigra brain
18 chr1:224496000-224516200 Weak transcription NHDF-Ad bronchial
19 chr1:224496000-224516400 Weak transcription Brain Anterior Caudate brain
20 chr1:224496000-224516400 Weak transcription Colonic Mucosa Colon
21 chr1:224496000-224517000 Weak transcription H9 Cell Line embryonic stem cell
22 chr1:224497000-224516200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
23 chr1:224497000-224516400 Weak transcription NHLF lung
24 chr1:224498000-224517000 Weak transcription Brain Angular Gyrus brain
25 chr1:224498000-224517200 Weak transcription Aorta Aorta
26 chr1:224498600-224516400 Weak transcription Brain Hippocampus Middle brain
27 chr1:224499000-224515400 Weak transcription Brain Cingulate Gyrus brain
28 chr1:224499400-224516400 Weak transcription Thymus Thymus
29 chr1:224499800-224515400 Weak transcription Skeletal Muscle Male skeletal muscle
30 chr1:224500200-224515400 Weak transcription HMEC breast
31 chr1:224500200-224515600 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
32 chr1:224501600-224516400 Weak transcription Primary T killer naive cells fromperipheralblood blood
33 chr1:224502400-224514600 Weak transcription Cortex derived primary cultured neurospheres brain
34 chr1:224503800-224516200 Weak transcription NH-A brain
35 chr1:224504200-224516200 Weak transcription Fetal Lung lung
36 chr1:224504200-224516600 Weak transcription Ovary ovary
37 chr1:224504200-224517000 Weak transcription HSMMtube muscle
38 chr1:224504400-224514600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
39 chr1:224504400-224514600 Weak transcription Gastric stomach
40 chr1:224504400-224516200 Weak transcription NHEK skin
41 chr1:224504400-224516600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
42 chr1:224504400-224517200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
43 chr1:224504400-224517200 Weak transcription Pancreas Pancrea
44 chr1:224504400-224517200 Weak transcription Sigmoid Colon Sigmoid Colon
45 chr1:224504600-224516600 Weak transcription Brain Germinal Matrix brain
46 chr1:224504600-224516800 Weak transcription Right Ventricle heart
47 chr1:224504800-224515400 Weak transcription Primary T helper naive cells fromperipheralblood blood
48 chr1:224504800-224516200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
49 chr1:224504800-224516400 Weak transcription Primary neutrophils fromperipheralblood blood
50 chr1:224505200-224516200 Weak transcription Primary T regulatory cells fromperipheralblood blood

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Last update: Aug 31, 2015