Variant report

Variant rs2405768
Chromosome Location chr12:41583309-41583310
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:89 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:41581200-41585200 Active TSS Stomach Smooth Muscle stomach
2 chr12:41581400-41584400 Bivalent/Poised TSS ES-I3 Cell Line embryonic stem cell
3 chr12:41581600-41583600 Bivalent/Poised TSS iPS-18 Cell Line embryonic stem cell
4 chr12:41581600-41583800 Bivalent/Poised TSS iPS-20b Cell Line embryonic stem cell
5 chr12:41581600-41584200 Bivalent/Poised TSS iPS-15b Cell Line embryonic stem cell
6 chr12:41581600-41584400 Active TSS Rectal Smooth Muscle rectum
7 chr12:41581800-41583400 Active TSS Brain Anterior Caudate brain
8 chr12:41581800-41583800 Bivalent/Poised TSS HUES48 Cell Line embryonic stem cell
9 chr12:41581800-41584000 Bivalent/Poised TSS H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
10 chr12:41581800-41584200 Bivalent/Poised TSS H9 Cell Line embryonic stem cell
11 chr12:41581800-41584200 Active TSS Brain Inferior Temporal Lobe brain
12 chr12:41581800-41584400 Bivalent/Poised TSS Duodenum Smooth Muscle Duodenum
13 chr12:41581800-41584600 Active TSS Brain Substantia Nigra brain
14 chr12:41581800-41585200 Active TSS Colon Smooth Muscle Colon
15 chr12:41582000-41583600 Bivalent/Poised TSS A549 lung
16 chr12:41582000-41583800 Bivalent/Poised TSS hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
17 chr12:41582000-41583800 Bivalent/Poised TSS HUES64 Cell Line embryonic stem cell
18 chr12:41582000-41583800 Active TSS Brain Cingulate Gyrus brain
19 chr12:41582000-41584000 Bivalent/Poised TSS iPS DF 6.9 Cell Line embryonic stem cell
20 chr12:41582000-41584000 Bivalent/Poised TSS Colonic Mucosa Colon
21 chr12:41582000-41584200 Bivalent/Poised TSS Fetal Intestine Large intestine
22 chr12:41582000-41584200 Bivalent/Poised TSS Fetal Intestine Small intestine
23 chr12:41582000-41584200 Active TSS Right Atrium heart
24 chr12:41582000-41584400 Active TSS Aorta Aorta
25 chr12:41582000-41584400 Bivalent Enhancer Fetal Heart heart
26 chr12:41582200-41583400 Flanking Active TSS Breast Myoepithelial Primary Cells Breast
27 chr12:41582200-41583600 Bivalent/Poised TSS Skeletal Muscle Male skeletal muscle
28 chr12:41582200-41584000 Active TSS Brain Angular Gyrus brain
29 chr12:41582200-41584000 Bivalent/Poised TSS Duodenum Mucosa Duodenum
30 chr12:41582200-41584200 Bivalent Enhancer Placenta Amnion Placenta Amnion
31 chr12:41582400-41584000 Flanking Bivalent TSS/Enh iPS DF 19.11 Cell Line embryonic stem cell
32 chr12:41582400-41584200 Bivalent/Poised TSS Psoas Muscle Psoas
33 chr12:41582600-41584000 Enhancers Pancreas Pancrea
34 chr12:41582600-41584000 Bivalent Enhancer HMEC breast
35 chr12:41582600-41584400 Active TSS Ovary ovary
36 chr12:41582800-41583600 Flanking Bivalent TSS/Enh HUES6 Cell Line embryonic stem cell
37 chr12:41582800-41583600 Flanking Bivalent TSS/Enh Fetal Brain Female brain
38 chr12:41582800-41583800 Flanking Bivalent TSS/Enh Foreskin Keratinocyte Primary Cells skin02 Skin
39 chr12:41582800-41583800 Flanking Bivalent TSS/Enh Adipose Nuclei Adipose
40 chr12:41582800-41583800 Bivalent/Poised TSS Rectal Mucosa Donor 31 rectum
41 chr12:41582800-41584000 Flanking Bivalent TSS/Enh Primary hematopoietic stem cells G-CSF-mobilized Female --
42 chr12:41582800-41584000 Flanking Bivalent TSS/Enh Foreskin Keratinocyte Primary Cells skin03 Skin
43 chr12:41582800-41584000 Flanking Active TSS Placenta Placenta
44 chr12:41582800-41584000 Bivalent/Poised TSS Skeletal Muscle Female skeletal muscle
45 chr12:41582800-41584000 Flanking Bivalent TSS/Enh HUVEC blood vessel
46 chr12:41582800-41584200 Flanking Bivalent TSS/Enh Cortex derived primary cultured neurospheres brain
47 chr12:41582800-41584200 Bivalent/Poised TSS Fetal Kidney kidney
48 chr12:41582800-41584200 Flanking Bivalent TSS/Enh NHEK skin
49 chr12:41582800-41584400 Flanking Bivalent TSS/Enh Primary hematopoietic stem cells G-CSF-mobilized Male --
50 chr12:41582800-41584400 Flanking Active TSS Ganglion Eminence derived primary cultured neurospheres brain

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