Variant report

Variant	rs2897229
Chromosome Location	chr12:41637057-41637058
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10506182	0.81[CEU][hapmap];0.87[EUR][1000 genomes]
rs10506183	0.88[YRI][hapmap]
rs10506184	0.88[YRI][hapmap]
rs10748275	0.83[EUR][1000 genomes]
rs10785165	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs10785174	0.83[EUR][1000 genomes]
rs10785177	0.81[CEU][hapmap];0.86[EUR][1000 genomes]
rs10879889	0.80[CEU][hapmap];0.87[EUR][1000 genomes]
rs11180421	0.81[CEU][hapmap];0.87[EUR][1000 genomes]
rs11612056	0.88[YRI][hapmap]
rs11614877	0.88[YRI][hapmap]
rs12369121	0.88[YRI][hapmap]
rs1367600	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs1405548	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs1431105	0.81[CEU][hapmap]
rs1431111	0.81[EUR][1000 genomes]
rs1431113	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs1431114	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs1431115	0.83[EUR][1000 genomes]
rs1431116	0.84[EUR][1000 genomes]
rs1852461	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs1870704	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs1966609	0.84[CEU][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2043134	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs2060053	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs2060054	0.82[EUR][1000 genomes]
rs2060055	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs2195706	0.87[EUR][1000 genomes]
rs2405768	0.83[CEU][hapmap]
rs2897228	0.87[EUR][1000 genomes]
rs4278570	0.80[EUR][1000 genomes]
rs4768335	0.84[CEU][hapmap]
rs6582280	0.87[EUR][1000 genomes]
rs6582281	0.87[EUR][1000 genomes]
rs6582282	0.87[EUR][1000 genomes]
rs6582283	0.87[EUR][1000 genomes]
rs7137842	0.87[EUR][1000 genomes]
rs7301200	0.83[EUR][1000 genomes]
rs7304286	0.83[EUR][1000 genomes]
rs7311069	0.87[YRI][hapmap]
rs7956699	0.82[EUR][1000 genomes]
rs7961657	0.87[EUR][1000 genomes]
rs9788073	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497867	chr12:41286305-41728650	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv427910	chr12:41374913-41650593	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1051524	chr12:41409977-41643387	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv899034	chr12:41515090-41698342	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv899035	chr12:41548545-41710912	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv469364	chr12:41631105-41710912	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv558699	chr12:41631105-41710912	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41635800-41637200	Enhancers	Primary hematopoietic stem cells	blood
2	chr12:41636800-41641000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr12:41636800-41645600	Weak transcription	Aorta	Aorta
4	chr12:41637000-41648200	Weak transcription	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links