Variant report

Variant	rs2406797
Chromosome Location	chr13:48682354-48682355
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11616639	0.88[ASN][1000 genomes]
rs1410117	0.95[ASN][1000 genomes]
rs1571256	0.95[CEU][hapmap];0.85[JPT][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1927213	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2094192	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2104480	0.80[CEU][hapmap];0.81[JPT][hapmap];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2148246	0.95[CEU][hapmap];0.86[JPT][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2148938	0.86[JPT][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2406709	0.95[CEU][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3809330	0.90[CHB][hapmap]
rs4294712	0.93[ASN][1000 genomes]
rs4369555	0.82[JPT][hapmap]
rs4941623	0.94[CEU][hapmap];0.86[JPT][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4942747	0.90[CHB][hapmap];0.80[JPT][hapmap]
rs4942748	0.99[ASN][1000 genomes]
rs56399021	0.91[ASN][1000 genomes]
rs7324484	0.95[CEU][hapmap];0.85[JPT][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7326363	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7333247	0.87[ASN][1000 genomes]
rs7336214	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7990060	0.90[CHB][hapmap]
rs8001243	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9316348	0.90[CHB][hapmap];0.80[JPT][hapmap]
rs9526442	0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs9526443	0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs9526445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526447	0.95[ASN][1000 genomes]
rs9526449	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9526451	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9534888	0.86[JPT][hapmap]
rs9534931	0.83[ASN][1000 genomes]
rs9534932	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9534933	0.90[ASN][1000 genomes]
rs9534937	0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs9534939	0.85[JPT][hapmap];0.91[ASN][1000 genomes]
rs9534943	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9534944	0.95[CEU][hapmap];0.85[JPT][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9534945	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9534946	0.92[ASN][1000 genomes]
rs9534947	0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs9534948	0.92[ASN][1000 genomes]
rs9534949	0.89[ASN][1000 genomes]
rs9534950	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9534951	0.91[ASN][1000 genomes]
rs9534952	0.93[ASN][1000 genomes]
rs9534957	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9534961	0.86[ASN][1000 genomes]
rs9534965	0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs9562802	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9567987	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9567991	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9567994	0.82[JPT][hapmap];0.99[ASN][1000 genomes]
rs9568000	0.90[ASN][1000 genomes]
rs9595835	0.90[CHB][hapmap];0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832601	chr13:48569952-48735939	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48669800-48685400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr13:48680800-48683600	Weak transcription	Right Atrium	heart
3	chr13:48680800-48685200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr13:48681200-48685000	Weak transcription	Small Intestine	intestine
5	chr13:48682200-48682600	Enhancers	HepG2	liver

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