Variant report

Variant	rs4942748
Chromosome Location	chr13:48693307-48693308
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs11616639	0.88[ASN][1000 genomes]
rs1327655	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1410117	0.95[ASN][1000 genomes]
rs1571256	0.98[ASN][1000 genomes]
rs1927213	0.99[ASN][1000 genomes]
rs2094192	0.97[ASN][1000 genomes]
rs2104480	0.96[ASN][1000 genomes]
rs2148246	0.95[ASN][1000 genomes]
rs2148938	0.98[ASN][1000 genomes]
rs2406709	0.95[ASN][1000 genomes]
rs2406797	0.99[ASN][1000 genomes]
rs3809330	0.83[EUR][1000 genomes]
rs4294712	0.93[ASN][1000 genomes]
rs4941623	0.97[ASN][1000 genomes]
rs4941627	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4942743	0.83[EUR][1000 genomes]
rs4942747	0.83[EUR][1000 genomes]
rs4942749	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4942750	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4942751	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4942752	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56399021	0.91[ASN][1000 genomes]
rs59829900	0.84[AMR][1000 genomes]
rs6561434	0.83[EUR][1000 genomes]
rs7317431	0.85[AMR][1000 genomes]
rs7318704	0.85[AMR][1000 genomes]
rs7322766	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7324484	0.97[ASN][1000 genomes]
rs7326363	0.99[ASN][1000 genomes]
rs7331551	0.86[AMR][1000 genomes]
rs7332326	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7333247	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7336214	0.99[ASN][1000 genomes]
rs7338844	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7338999	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7339370	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7986400	0.83[EUR][1000 genomes]
rs7990060	0.83[EUR][1000 genomes]
rs8001243	0.97[ASN][1000 genomes]
rs9316348	0.83[EUR][1000 genomes]
rs9316352	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9316353	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9316354	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9316355	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9316356	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9316357	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9316358	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9316359	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9526442	0.93[ASN][1000 genomes]
rs9526443	0.93[ASN][1000 genomes]
rs9526445	0.99[ASN][1000 genomes]
rs9526447	0.95[ASN][1000 genomes]
rs9526449	0.98[ASN][1000 genomes]
rs9526451	0.92[ASN][1000 genomes]
rs9534931	0.83[ASN][1000 genomes]
rs9534932	0.87[ASN][1000 genomes]
rs9534933	0.90[ASN][1000 genomes]
rs9534937	0.91[ASN][1000 genomes]
rs9534939	0.91[ASN][1000 genomes]
rs9534943	0.97[ASN][1000 genomes]
rs9534944	0.97[ASN][1000 genomes]
rs9534945	0.97[ASN][1000 genomes]
rs9534946	0.92[ASN][1000 genomes]
rs9534947	0.92[ASN][1000 genomes]
rs9534948	0.92[ASN][1000 genomes]
rs9534949	0.87[ASN][1000 genomes]
rs9534950	0.98[ASN][1000 genomes]
rs9534951	0.91[ASN][1000 genomes]
rs9534952	0.93[ASN][1000 genomes]
rs9534957	0.99[ASN][1000 genomes]
rs9534961	0.86[ASN][1000 genomes]
rs9534965	0.81[ASN][1000 genomes]
rs9562802	0.97[ASN][1000 genomes]
rs9562806	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9562808	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9567987	0.95[ASN][1000 genomes]
rs9567991	0.96[ASN][1000 genomes]
rs9567994	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9567999	0.83[EUR][1000 genomes]
rs9568000	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9568001	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9568002	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9568003	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9568004	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9568005	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9568006	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9568008	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9568009	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9568010	0.88[AMR][1000 genomes]
rs9568014	0.87[AMR][1000 genomes]
rs9591135	0.83[EUR][1000 genomes]
rs9591138	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9591139	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9595835	0.80[EUR][1000 genomes]
rs9595851	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832601	chr13:48569952-48735939	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48686600-48700000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr13:48687200-48694800	Weak transcription	Right Atrium	heart
3	chr13:48691200-48698400	Weak transcription	Adipose Nuclei	Adipose
4	chr13:48692000-48695000	Weak transcription	Fetal Kidney	kidney
5	chr13:48692200-48697800	Weak transcription	HepG2	liver
6	chr13:48693000-48695800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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