Variant report

Variant	rs9568000
Chromosome Location	chr13:48687081-48687082
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:48610309..48612694-chr13:48684921..48687258,2	K562	blood:

Variant related genes	Relation type
ENSG00000136143	Chromatin interaction
ENSG00000136159	Chromatin interaction

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs1327655	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1410117	0.86[ASN][1000 genomes]
rs1571256	0.89[ASN][1000 genomes]
rs17350996	0.83[EUR][1000 genomes]
rs1927213	0.89[ASN][1000 genomes]
rs2025865	0.83[EUR][1000 genomes]
rs2094192	0.87[ASN][1000 genomes]
rs2104480	0.86[ASN][1000 genomes]
rs2148246	0.85[ASN][1000 genomes]
rs2148938	0.89[ASN][1000 genomes]
rs2406709	0.85[ASN][1000 genomes]
rs2406797	0.90[ASN][1000 genomes]
rs3809330	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4294712	0.84[ASN][1000 genomes]
rs4941623	0.88[ASN][1000 genomes]
rs4941627	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4942742	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4942743	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4942747	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4942748	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4942749	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4942750	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4942751	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4942752	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56399021	0.81[ASN][1000 genomes]
rs59829900	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6561434	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7317431	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7318704	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7322766	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7323969	0.84[EUR][1000 genomes]
rs7324484	0.87[ASN][1000 genomes]
rs7326363	0.89[ASN][1000 genomes]
rs7331551	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7332147	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7332326	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7333247	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7336214	0.90[ASN][1000 genomes]
rs7338844	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7338999	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7339370	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7981114	0.84[EUR][1000 genomes]
rs7986400	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7990060	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8001243	0.89[ASN][1000 genomes]
rs9285165	0.84[EUR][1000 genomes]
rs9316348	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9316349	0.84[EUR][1000 genomes]
rs9316352	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9316353	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9316354	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9316355	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9316356	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9316357	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9316358	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9316359	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9526442	0.84[ASN][1000 genomes]
rs9526443	0.84[ASN][1000 genomes]
rs9526445	0.90[ASN][1000 genomes]
rs9526446	0.80[ASN][1000 genomes]
rs9526447	0.86[ASN][1000 genomes]
rs9526449	0.88[ASN][1000 genomes]
rs9526451	0.83[ASN][1000 genomes]
rs9534933	0.81[ASN][1000 genomes]
rs9534937	0.81[ASN][1000 genomes]
rs9534939	0.81[ASN][1000 genomes]
rs9534943	0.87[ASN][1000 genomes]
rs9534944	0.87[ASN][1000 genomes]
rs9534945	0.87[ASN][1000 genomes]
rs9534946	0.83[ASN][1000 genomes]
rs9534947	0.83[ASN][1000 genomes]
rs9534948	0.83[ASN][1000 genomes]
rs9534949	0.97[ASN][1000 genomes]
rs9534950	0.89[ASN][1000 genomes]
rs9534951	0.82[ASN][1000 genomes]
rs9534952	0.84[ASN][1000 genomes]
rs9534957	0.89[ASN][1000 genomes]
rs9562800	0.80[EUR][1000 genomes]
rs9562802	0.87[ASN][1000 genomes]
rs9562806	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9562808	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9567987	0.85[ASN][1000 genomes]
rs9567991	0.87[ASN][1000 genomes]
rs9567993	0.82[EUR][1000 genomes]
rs9567994	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9567999	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9568001	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9568002	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9568003	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9568004	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9568005	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9568006	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9568008	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9568009	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9568010	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9568014	0.91[AMR][1000 genomes]
rs9591135	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9591138	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9591139	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9591140	0.84[EUR][1000 genomes]
rs9595835	0.92[EUR][1000 genomes]
rs9595836	0.80[EUR][1000 genomes]
rs9595843	0.84[EUR][1000 genomes]
rs9595851	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832601	chr13:48569952-48735939	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48683400-48687800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr13:48685000-48688800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr13:48685000-48689000	Enhancers	Adipose Nuclei	Adipose
4	chr13:48685000-48689200	Enhancers	HepG2	liver
5	chr13:48685200-48687200	Enhancers	Left Ventricle	heart
6	chr13:48685200-48687200	Enhancers	Right Atrium	heart
7	chr13:48685800-48687200	Weak transcription	NH-A	brain
8	chr13:48685800-48687400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr13:48686000-48687200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr13:48686000-48687400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr13:48686200-48687600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr13:48686200-48687600	Weak transcription	Brain Angular Gyrus	brain
13	chr13:48686400-48687400	Weak transcription	Hela-S3	cervix
14	chr13:48686600-48700000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr13:48686800-48688600	Enhancers	NHEK	skin
16	chr13:48686800-48688800	Enhancers	Placenta	Placenta
17	chr13:48687000-48687200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr13:48687000-48687200	Enhancers	HMEC	breast
19	chr13:48687000-48688200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr13:48687000-48688400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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