Variant report

Variant	rs2025865
Chromosome Location	chr13:48688879-48688880
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs12584652	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1327655	0.84[EUR][1000 genomes]
rs17350996	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35299472	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3809330	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4941627	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4942743	0.87[EUR][1000 genomes]
rs4942747	0.87[EUR][1000 genomes]
rs4942749	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4942750	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4942751	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4942752	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6561434	0.87[EUR][1000 genomes]
rs7317431	0.83[EUR][1000 genomes]
rs7318704	0.83[EUR][1000 genomes]
rs7322766	0.84[EUR][1000 genomes]
rs7323969	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7330472	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7331900	0.87[EUR][1000 genomes]
rs7332326	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7333247	0.82[EUR][1000 genomes]
rs7338844	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7338999	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7339370	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7981114	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7986400	0.87[EUR][1000 genomes]
rs7990060	0.87[EUR][1000 genomes]
rs9285165	0.98[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs9316346	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9316347	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9316348	0.87[EUR][1000 genomes]
rs9316349	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9316352	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs9316353	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9316354	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9316355	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9316356	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9316357	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9316358	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9316359	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9316360	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9562800	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9562806	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9562808	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs9567979	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9567993	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9567999	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9568000	0.83[EUR][1000 genomes]
rs9568001	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9568002	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9568003	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9568004	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9568005	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9568006	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9568008	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9568009	0.86[EUR][1000 genomes]
rs9568010	0.83[EUR][1000 genomes]
rs9568015	0.82[EUR][1000 genomes]
rs9591135	0.87[EUR][1000 genomes]
rs9591138	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9591139	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9591140	0.89[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs9595835	0.84[EUR][1000 genomes]
rs9595836	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9595837	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9595843	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832601	chr13:48569952-48735939	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48685000-48689000	Enhancers	Adipose Nuclei	Adipose
2	chr13:48685000-48689200	Enhancers	HepG2	liver
3	chr13:48686600-48700000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr13:48687200-48694800	Weak transcription	Right Atrium	heart
5	chr13:48687800-48689000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr13:48688600-48692000	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr13:48688800-48691000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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