Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12869041	0.96[EUR][1000 genomes]
rs1327655	0.85[AFR][1000 genomes]
rs17350996	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs17425881	1.00[CEU][hapmap];0.94[GIH][hapmap]
rs2025865	0.82[EUR][1000 genomes]
rs2296573	1.00[CEU][hapmap];0.94[GIH][hapmap]
rs7322766	0.85[AFR][1000 genomes]
rs7323969	0.83[EUR][1000 genomes]
rs7981114	0.83[ASW][hapmap];1.00[CEU][hapmap];0.94[GIH][hapmap];0.82[TSI][hapmap];0.90[YRI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9285165	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9316346	0.83[ASW][hapmap];1.00[CEU][hapmap];0.94[GIH][hapmap];0.82[TSI][hapmap];0.89[YRI][hapmap];0.82[EUR][1000 genomes]
rs9316347	0.82[EUR][1000 genomes]
rs9316349	0.83[ASW][hapmap];1.00[CEU][hapmap];0.94[GIH][hapmap];0.82[TSI][hapmap];0.90[YRI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9316360	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9562800	0.82[EUR][1000 genomes]
rs9567993	0.81[EUR][1000 genomes]
rs9568010	0.83[AFR][1000 genomes]
rs9568014	0.86[YRI][hapmap];0.85[AFR][1000 genomes]
rs9591140	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9595836	0.82[EUR][1000 genomes]
rs9595843	0.83[EUR][1000 genomes]
rs9595851	0.87[AFR][1000 genomes]
rs9595852	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832601	chr13:48569952-48735939	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv541766	chr13:48703229-48857639	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1047140	chr13:48703732-48765860	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv541767	chr13:48703732-48765860	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48701800-48725800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:48714000-48716200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr13:48715400-48716200	Weak transcription	Lung	lung
4	chr13:48715600-48716200	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr13:48715600-48720600	Enhancers	Primary monocytes fromperipheralblood	blood

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