Variant report

Variant	rs59829900
Chromosome Location	chr13:48633655-48633656
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1327655	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35299472	0.81[EUR][1000 genomes]
rs3809330	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4941627	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4942742	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4942743	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4942747	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4942748	0.84[AMR][1000 genomes]
rs4942749	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4942750	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4942751	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4942752	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6561434	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7317431	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7318704	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7322766	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7331551	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7332147	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7332326	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7333247	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7338844	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7338999	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7339370	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7986400	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7990060	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9316346	0.81[EUR][1000 genomes]
rs9316347	0.81[EUR][1000 genomes]
rs9316348	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9316352	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9316353	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9316354	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9316355	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9316356	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9316357	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9316358	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9316359	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9534949	0.83[ASN][1000 genomes]
rs9562806	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9562808	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9567994	0.89[AMR][1000 genomes]
rs9567999	0.88[EUR][1000 genomes]
rs9568000	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9568001	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9568002	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9568003	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9568004	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9568005	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9568006	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9568008	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9568009	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9568010	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9568014	0.90[AMR][1000 genomes]
rs9591135	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9591138	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9591139	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9595835	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9595837	0.81[EUR][1000 genomes]
rs9595851	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430556	chr13:48516799-48679099	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv832601	chr13:48569952-48735939	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48612600-48640400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr13:48612600-48645000	Weak transcription	Stomach Mucosa	stomach
3	chr13:48612800-48640200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr13:48612800-48640400	Weak transcription	Psoas Muscle	Psoas
5	chr13:48613000-48640200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr13:48613000-48640400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr13:48613200-48640400	Weak transcription	Fetal Heart	heart
8	chr13:48613200-48641600	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr13:48613200-48642200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr13:48613400-48641600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr13:48613400-48647000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr13:48613600-48636400	Weak transcription	Hela-S3	cervix
13	chr13:48613600-48645000	Weak transcription	Small Intestine	intestine
14	chr13:48614400-48636400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr13:48616400-48642800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr13:48618800-48644800	Weak transcription	Colonic Mucosa	Colon
17	chr13:48623200-48640200	Weak transcription	Colon Smooth Muscle	Colon
18	chr13:48623200-48652200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr13:48625600-48636400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr13:48625600-48640200	Weak transcription	Fetal Kidney	kidney
21	chr13:48625600-48640200	Weak transcription	A549	lung
22	chr13:48625800-48637200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr13:48625800-48640400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr13:48626000-48640200	Weak transcription	HUVEC	blood vessel
25	chr13:48627200-48639400	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr13:48627200-48640200	Weak transcription	NH-A	brain
27	chr13:48627200-48640400	Weak transcription	K562	blood
28	chr13:48627400-48634200	Weak transcription	Right Ventricle	heart
29	chr13:48627400-48636800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr13:48627400-48637200	Weak transcription	Fetal Thymus	thymus
31	chr13:48627400-48639800	Weak transcription	HSMMtube	muscle
32	chr13:48627400-48640200	Weak transcription	Brain Angular Gyrus	brain
33	chr13:48627400-48640200	Weak transcription	Brain Anterior Caudate	brain
34	chr13:48627400-48640200	Weak transcription	Fetal Brain Female	brain
35	chr13:48627400-48640200	Weak transcription	Pancreas	Pancrea
36	chr13:48627400-48640200	Weak transcription	NHDF-Ad	bronchial
37	chr13:48627400-48640400	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr13:48627400-48640400	Weak transcription	Lung	lung
39	chr13:48627400-48640800	Weak transcription	Esophagus	oesophagus
40	chr13:48627400-48642200	Weak transcription	Brain Cingulate Gyrus	brain
41	chr13:48627400-48644800	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr13:48627400-48645000	Weak transcription	Gastric	stomach
43	chr13:48627400-48645200	Weak transcription	Aorta	Aorta
44	chr13:48627600-48634200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr13:48627600-48639200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr13:48627600-48639600	Weak transcription	Stomach Smooth Muscle	stomach
47	chr13:48627600-48640200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr13:48627600-48640200	Weak transcription	Brain Germinal Matrix	brain
49	chr13:48627600-48640200	Weak transcription	Placenta	Placenta
50	chr13:48627600-48640200	Weak transcription	Ovary	ovary

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