Variant report

Variant	rs2408382
Chromosome Location	chr5:124655934-124655935
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10045772	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10900775	0.93[ASN][1000 genomes]
rs11744172	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12657560	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13164435	0.86[ASN][1000 genomes]
rs1439614	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1444648	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1444649	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1550371	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1550372	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1898913	0.96[ASN][1000 genomes]
rs1992282	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2408380	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs35598441	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4507483	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4836173	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs751657	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs930416	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124649400-124672400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:124653600-124659000	Weak transcription	Brain Substantia Nigra	brain
3	chr5:124653600-124661400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr5:124653600-124661600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr5:124653800-124658800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr5:124653800-124659200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr5:124653800-124659200	Weak transcription	Fetal Brain Male	brain
8	chr5:124653800-124661400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr5:124654200-124658800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr5:124654200-124661800	Weak transcription	Brain Germinal Matrix	brain
11	chr5:124654400-124658800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr5:124654600-124659200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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