Variant report

Variant	rs1898913
Chromosome Location	chr5:124649385-124649386
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10045772	0.94[ASN][1000 genomes]
rs10900775	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11744172	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11747033	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11750563	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12657560	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13164435	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1439598	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1439599	0.83[ASN][1000 genomes]
rs1439600	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1439601	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1439614	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1444648	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1444649	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1550371	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1550372	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1992282	0.94[ASN][1000 genomes]
rs2408380	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2408382	0.96[ASN][1000 genomes]
rs35598441	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3898799	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4507483	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4836173	0.96[ASN][1000 genomes]
rs751657	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs930415	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs930416	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034696	chr5:124616571-124654771	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124648000-124649400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:124648200-124649800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr5:124648200-124651800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr5:124648400-124651800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:124648400-124651800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr5:124648400-124652000	Weak transcription	Osteobl	bone
7	chr5:124648800-124649400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr5:124648800-124650000	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
9	chr5:124649200-124649400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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