Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10900775	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11747033	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11750563	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12657560	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13164435	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1439598	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1439599	0.86[ASN][1000 genomes]
rs1439600	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1439601	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1439614	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1444648	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1444649	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1550371	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1550372	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1898913	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2408380	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35598441	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4507483	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs751657	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs930415	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs930416	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882823	chr5:124569471-124639468	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1034696	chr5:124616571-124654771	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124614400-124631400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:124622400-124628600	Weak transcription	Fetal Brain Male	brain
3	chr5:124627400-124628800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:124627600-124628600	Weak transcription	Fetal Brain Female	brain
5	chr5:124627600-124629200	Enhancers	Primary B cells from peripheral blood	blood
6	chr5:124627800-124633800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr5:124628000-124629800	Enhancers	Dnd41	blood

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