Variant report

Variant	rs1439600
Chromosome Location	chr5:124631575-124631576
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10045772	0.80[AMR][1000 genomes]
rs10900775	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11747033	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11750563	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12657560	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13164435	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1439598	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1439599	0.87[ASN][1000 genomes]
rs1439601	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1439614	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1444648	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1444649	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1550371	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1550372	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1898913	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2408380	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35598441	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3898799	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4507483	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs751657	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs930415	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs930416	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882823	chr5:124569471-124639468	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1034696	chr5:124616571-124654771	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124627800-124633800	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr5:124629000-124634000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:124629400-124631600	Enhancers	Fetal Heart	heart
4	chr5:124629600-124634000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:124630400-124631800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr5:124630400-124634600	Weak transcription	Fetal Brain Male	brain
7	chr5:124630800-124633800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:124630800-124637200	Weak transcription	Fetal Brain Female	brain
9	chr5:124631000-124631800	Enhancers	HUVEC	blood vessel
10	chr5:124631000-124631800	Enhancers	Osteobl	bone
11	chr5:124631200-124631600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr5:124631200-124631600	Enhancers	Muscle Satellite Cultured Cells	--
13	chr5:124631200-124631600	Enhancers	A549	lung
14	chr5:124631200-124631600	Enhancers	Dnd41	blood
15	chr5:124631200-124631600	Enhancers	HSMM	muscle
16	chr5:124631200-124631800	Enhancers	HMEC	breast
17	chr5:124631200-124631800	Enhancers	NH-A	brain
18	chr5:124631200-124632000	Enhancers	NHEK	skin
19	chr5:124631400-124631600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr5:124631400-124631600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr5:124631400-124631800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr5:124631400-124631800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr5:124631400-124631800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr5:124631400-124631800	Enhancers	NHDF-Ad	bronchial
25	chr5:124631400-124632400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr5:124631400-124633200	Enhancers	Spleen	Spleen
27	chr5:124631400-124639400	Weak transcription	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links