Variant report

Variant	rs1439614
Chromosome Location	chr5:124652649-124652650
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10045772	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10900775	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11744172	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11747033	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11750563	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12657560	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13164435	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1439598	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1439599	0.82[ASN][1000 genomes]
rs1439600	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1439601	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1444648	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1444649	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1550371	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1550372	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1898913	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1992282	0.94[ASN][1000 genomes]
rs2408380	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2408382	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs35598441	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3898799	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4507483	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4836173	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs751657	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs930415	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs930416	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034696	chr5:124616571-124654771	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124649400-124672400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:124650600-124655200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:124650800-124653000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr5:124650800-124654400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:124651000-124653000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr5:124651800-124653400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr5:124651800-124653600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr5:124652000-124652800	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr5:124652000-124652800	Enhancers	Osteobl	bone
10	chr5:124652000-124653800	Enhancers	Fetal Brain Male	brain
11	chr5:124652200-124653000	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr5:124652400-124653200	Weak transcription	A549	lung
13	chr5:124652400-124653400	Enhancers	Fetal Intestine Small	intestine
14	chr5:124652400-124653600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr5:124652400-124653600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr5:124652600-124653000	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr5:124652600-124653000	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr5:124652600-124653400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr5:124652600-124653400	Enhancers	Fetal Intestine Large	intestine
20	chr5:124652600-124653600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr5:124652600-124653600	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr5:124652600-124654200	Enhancers	Brain Germinal Matrix	brain
23	chr5:124652600-124654400	Enhancers	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links