Variant report
| Variant | rs2415414 |
|---|---|
| Chromosome Location | chr14:38255294-38255295 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs12587895 | 0.89[EUR][1000 genomes] |
| rs12590844 | 0.88[EUR][1000 genomes] |
| rs17107096 | 0.89[EUR][1000 genomes] |
| rs17107102 | 0.89[EUR][1000 genomes] |
| rs17107106 | 0.89[EUR][1000 genomes] |
| rs1951645 | 0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1952784 | 0.87[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1957584 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1980680 | 0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4433710 | 0.95[ASN][1000 genomes] |
| rs4901272 | 0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4901274 | 0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55712036 | 0.88[EUR][1000 genomes] |
| rs58878623 | 0.86[EUR][1000 genomes] |
| rs59262826 | 0.89[EUR][1000 genomes] |
| rs61977158 | 0.85[EUR][1000 genomes] |
| rs66496750 | 0.84[EUR][1000 genomes] |
| rs66617416 | 0.84[EUR][1000 genomes] |
| rs67863208 | 0.89[EUR][1000 genomes] |
| rs726238 | 0.89[EUR][1000 genomes] |
| rs8010511 | 0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8011077 | 0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8012810 | 0.88[EUR][1000 genomes] |
| rs927495 | 0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs969446 | 0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530038 | chr14:37590543-38336191 | Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 58 gene(s) | inside rSNPs | diseases |
| 2 | nsv916985 | chr14:38052347-38838551 | Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 59 gene(s) | inside rSNPs | diseases |
| 3 | nsv564383 | chr14:38223275-38262762 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers | TF binding regionCpG island | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv564384 | chr14:38233493-38262762 | Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers | TF binding regionCpG island | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv564385 | chr14:38246440-38321607 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:38255200-38255600 | ZNF genes & repeats | Fetal Stomach | stomach |
| 2 | chr14:38255200-38256600 | Weak transcription | HepG2 | liver |
