Variant report
| Variant | rs55712036 |
|---|---|
| Chromosome Location | chr14:38242844-38242845 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs11849079 | 0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs12587895 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12590844 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs17107096 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs17107102 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs17107106 | 0.84[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs17107141 | 0.85[EUR][1000 genomes] |
| rs1951645 | 0.87[EUR][1000 genomes] |
| rs1952784 | 0.83[EUR][1000 genomes] |
| rs1957584 | 0.89[EUR][1000 genomes] |
| rs1980680 | 0.87[EUR][1000 genomes] |
| rs2415414 | 0.88[EUR][1000 genomes] |
| rs4901274 | 0.89[EUR][1000 genomes] |
| rs58878623 | 0.91[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs59262826 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs61977158 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs66496750 | 0.94[EUR][1000 genomes] |
| rs66617416 | 0.94[EUR][1000 genomes] |
| rs67863208 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs726238 | 0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs8010511 | 0.89[EUR][1000 genomes] |
| rs8011077 | 0.88[EUR][1000 genomes] |
| rs8012810 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs969446 | 0.88[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530038 | chr14:37590543-38336191 | Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 58 gene(s) | inside rSNPs | diseases |
| 2 | nsv916985 | chr14:38052347-38838551 | Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 59 gene(s) | inside rSNPs | diseases |
| 3 | nsv564383 | chr14:38223275-38262762 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers | TF binding regionCpG island | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv564384 | chr14:38233493-38262762 | Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers | TF binding regionCpG island | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:38241800-38247200 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 2 | chr14:38242000-38247600 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
