Variant report

Variant	rs4901274
Chromosome Location	chr14:38260992-38260993
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RXRA	chr14:38260493-38261030	HepG2	liver:	n/a	chr14:38260722-38260735 chr14:38260720-38260736 chr14:38260722-38260735 chr14:38260722-38260735 chr14:38260718-38260738
2	ELF1	chr14:38260533-38261215	HepG2	liver:	n/a	chr14:38260845-38260856
3	REST	chr14:38260448-38261018	HepG2	liver:	n/a	n/a
4	SP1	chr14:38260423-38261255	HepG2	liver:	n/a	n/a
5	FOXA2	chr14:38259595-38262168	HepG2	liver:	n/a	chr14:38260697-38260709
6	NFIC	chr14:38260333-38261214	HepG2	liver:	n/a	n/a
7	HDAC2	chr14:38260509-38261159	HepG2	liver:	n/a	chr14:38260807-38260821 chr14:38260805-38260819 chr14:38260700-38260709 chr14:38260810-38260824
8	MYBL2	chr14:38260477-38261110	HepG2	liver:	n/a	n/a
9	MBD4	chr14:38260326-38261281	HepG2	liver:	n/a	n/a
10	MAX	chr14:38260442-38261117	HepG2	liver:	n/a	n/a
11	EP300	chr14:38260444-38261082	HepG2	liver:	n/a	chr14:38260700-38260710 chr14:38260806-38260820 chr14:38260847-38260856
12	EP300	chr14:38260329-38261092	HepG2	liver:	n/a	chr14:38260700-38260710 chr14:38260806-38260820 chr14:38260847-38260856
13	FOXA1	chr14:38260375-38261666	HepG2	liver:	n/a	chr14:38260697-38260709 chr14:38260695-38260710
14	FOXA1	chr14:38260403-38261023	HepG2	liver:	n/a	chr14:38260697-38260709 chr14:38260695-38260710
15	NFIC	chr14:38260519-38261290	HepG2	liver:	n/a	n/a
16	FOXA1	chr14:38260475-38261137	HepG2	liver:	n/a	chr14:38260697-38260709 chr14:38260695-38260710
17	HDAC2	chr14:38260503-38261003	HepG2	liver:	n/a	chr14:38260807-38260821 chr14:38260805-38260819 chr14:38260700-38260709 chr14:38260810-38260824
18	ELF1	chr14:38260590-38261091	HepG2	liver:	n/a	chr14:38260845-38260856
19	MXI1	chr14:38260554-38261016	HepG2	liver:	n/a	n/a
20	TEAD4	chr14:38260102-38261177	HepG2	liver:	n/a	n/a
21	ARID3A	chr14:38260485-38261042	HepG2	liver:	n/a	chr14:38260596-38260612 chr14:38260595-38260611
22	HNF4A	chr14:38260480-38261047	HepG2	liver:	n/a	chr14:38260722-38260735 chr14:38260720-38260735 chr14:38260720-38260735 chr14:38260722-38260735 chr14:38260720-38260735 chr14:38260720-38260735 chr14:38260719-38260737 chr14:38260721-38260735 chr14:38260722-38260734 chr14:38260721-38260734 chr14:38260722-38260735 chr14:38260720-38260735 chr14:38260720-38260735 chr14:38260722-38260734 chr14:38260721-38260735 chr14:38260721-38260733
23	MYBL2	chr14:38260284-38261429	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
TTC6	TF binding region

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11849079	0.80[CEU][hapmap]
rs12434679	0.85[JPT][hapmap]
rs12587895	0.90[EUR][1000 genomes]
rs12590844	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs17107096	0.90[EUR][1000 genomes]
rs17107102	0.95[CEU][hapmap];0.90[EUR][1000 genomes]
rs17107106	0.94[CEU][hapmap];0.90[EUR][1000 genomes]
rs17107141	0.80[CEU][hapmap]
rs1951645	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1952784	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1957584	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1980680	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2415414	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4433710	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4901272	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55712036	0.89[EUR][1000 genomes]
rs58878623	0.88[EUR][1000 genomes]
rs59262826	0.90[EUR][1000 genomes]
rs61977158	0.86[EUR][1000 genomes]
rs66496750	0.85[EUR][1000 genomes]
rs66617416	0.85[EUR][1000 genomes]
rs67863208	0.90[EUR][1000 genomes]
rs726238	0.95[CEU][hapmap];0.90[EUR][1000 genomes]
rs8010511	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8011077	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8012810	0.89[EUR][1000 genomes]
rs8019481	0.86[JPT][hapmap]
rs927495	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs969446	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530038	chr14:37590543-38336191	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv916985	chr14:38052347-38838551	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
3	nsv564383	chr14:38223275-38262762	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
4	nsv564384	chr14:38233493-38262762	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
5	nsv564385	chr14:38246440-38321607	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:38259400-38261600	Enhancers	HepG2	liver
2	chr14:38260600-38261200	Flanking Active TSS	Liver	Liver
3	chr14:38260600-38261200	Enhancers	Stomach Mucosa	stomach

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