Variant report

Variant	rs242101
Chromosome Location	chr14:69462141-69462142
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10151419	0.89[AMR][1000 genomes]
rs11623192	0.88[AMR][1000 genomes]
rs1275194	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2012752	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs242091	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs242097	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs242100	0.83[AMR][1000 genomes]
rs242102	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs242104	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs242109	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs436106	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs446091	0.82[AMR][1000 genomes]
rs4899275	0.82[AMR][1000 genomes]
rs4902683	0.84[EUR][1000 genomes]
rs927064	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832823	chr14:69388853-69567638	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69447000-69471400	Weak transcription	Esophagus	oesophagus
2	chr14:69455600-69465200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:69456000-69464400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr14:69456000-69471200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:69460600-69463200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr14:69461600-69462800	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr14:69461800-69462200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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