Variant report

Variant	rs436106
Chromosome Location	chr14:69455915-69455916
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69366379..69368743-chr14:69454832..69457651,2	MCF-7	breast:
2	chr14:69443728..69448549-chr14:69453404..69457507,10	MCF-7	breast:
3	chr14:69381386..69384151-chr14:69454672..69457482,2	MCF-7	breast:
4	chr14:69454329..69457831-chr14:69459163..69461306,3	MCF-7	breast:
5	chr14:69442613..69444498-chr14:69453926..69457303,3	MCF-7	breast:
6	chr14:69453762..69456059-chr14:69456066..69458311,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259062	Chromatin interaction
ENSG00000072110	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10151419	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11620980	1.00[ASN][1000 genomes]
rs11623192	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1275194	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1983700	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2012752	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs242091	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs242096	1.00[ASN][1000 genomes]
rs242097	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs242099	1.00[ASN][1000 genomes]
rs242101	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs242102	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs242104	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs242109	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs398504	1.00[ASN][1000 genomes]
rs4083451	1.00[ASN][1000 genomes]
rs4899275	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902681	1.00[ASN][1000 genomes]
rs4902683	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56060157	1.00[ASN][1000 genomes]
rs61981591	1.00[ASN][1000 genomes]
rs927064	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832823	chr14:69388853-69567638	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69447000-69471400	Weak transcription	Esophagus	oesophagus
2	chr14:69449200-69458400	Weak transcription	HUVEC	blood vessel
3	chr14:69453200-69456400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr14:69453400-69460600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr14:69454400-69456000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr14:69454400-69456000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr14:69454400-69456200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr14:69454400-69456400	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr14:69454600-69456000	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr14:69454800-69456200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr14:69454800-69456200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr14:69454800-69457400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr14:69454800-69461200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr14:69455000-69456000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr14:69455400-69456200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr14:69455400-69456400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr14:69455400-69456600	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr14:69455600-69465200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr14:69455800-69456000	Enhancers	H9 Cell Line	embryonic stem cell

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