Variant report

Variant	rs2426528
Chromosome Location	chr20:53145235-53145236
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11907565	1.00[AMR][1000 genomes]
rs11907588	1.00[AMR][1000 genomes]
rs2426523	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2426527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2426532	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2426533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2426534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55924953	1.00[AMR][1000 genomes]
rs7268298	1.00[AMR][1000 genomes]
rs73271314	1.00[AMR][1000 genomes]
rs73913652	1.00[AMR][1000 genomes]
rs73913655	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:53120800-53148800	Weak transcription	Left Ventricle	heart
2	chr20:53129600-53149200	Weak transcription	Aorta	Aorta
3	chr20:53143000-53147200	Weak transcription	Brain Germinal Matrix	brain
4	chr20:53144600-53145600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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