Variant report

Variant	rs2426532
Chromosome Location	chr20:53154122-53154123
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11907565	1.00[AMR][1000 genomes]
rs11907588	1.00[AMR][1000 genomes]
rs2426523	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2426527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2426528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2426533	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2426534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55924953	1.00[AMR][1000 genomes]
rs7268298	1.00[AMR][1000 genomes]
rs73913652	1.00[AMR][1000 genomes]
rs73913655	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv1067497	chr20:53146241-53751820	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:53153000-53161800	Weak transcription	Osteobl	bone
2	chr20:53153400-53155200	Weak transcription	Ovary	ovary

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links