Variant report
| Variant | rs73913652 |
|---|---|
| Chromosome Location | chr20:53287544-53287545 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr20:53261915..53264807-chr20:53286541..53288254,2 | MCF-7 | breast: | |
| 2 | chr20:53286235..53288199-chr20:53294534..53296674,2 | MCF-7 | breast: | |
| 3 | chr15:52857884..52859774-chr20:53285881..53288351,2 | MCF-7 | breast: | |
| 4 | chr20:53287233..53287980-chr20:53296972..53297626,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs11907565 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11907588 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2426523 | 1.00[AMR][1000 genomes] |
| rs2426527 | 1.00[AMR][1000 genomes] |
| rs2426528 | 1.00[AMR][1000 genomes] |
| rs2426532 | 1.00[AMR][1000 genomes] |
| rs2426533 | 1.00[AMR][1000 genomes] |
| rs2426534 | 1.00[AMR][1000 genomes] |
| rs55924953 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57213108 | 0.91[AFR][1000 genomes] |
| rs61035069 | 0.91[AFR][1000 genomes] |
| rs7268298 | 1.00[AMR][1000 genomes] |
| rs73913655 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs8116736 | 0.91[AFR][1000 genomes] |
| rs8123380 | 0.91[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1067497 | chr20:53146241-53751820 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 66 gene(s) | inside rSNPs | diseases |
| 2 | nsv1064144 | chr20:53175264-53750137 | Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 66 gene(s) | inside rSNPs | diseases |
| 3 | nsv544302 | chr20:53175264-53750137 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 66 gene(s) | inside rSNPs | diseases |
| 4 | nsv1060552 | chr20:53234716-53655115 | Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 54 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr20:53285600-53290000 | Weak transcription | iPS-18 Cell Line | embryonic stem cell |
