Variant report

Variant	rs2428290
Chromosome Location	chr7:116684434-116684435
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:116673925..116679714-chr7:116680423..116685011,12	K562	blood:
2	chr7:116683661..116685296-chr7:116691714..116693908,2	K562	blood:
3	chr7:116676871..116678558-chr7:116682822..116684440,2	K562	blood:
4	chr7:116682586..116684476-chr7:116685425..116687752,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10260368	1.00[ASW][hapmap];0.82[LWK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs2429032	0.94[ASW][hapmap];0.89[LWK][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes]
rs4489259	1.00[ASW][hapmap];0.91[LWK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs6466595	0.82[YRI][hapmap]
rs6963873	0.86[AFR][1000 genomes]
rs7788320	0.83[ASW][hapmap];0.85[LWK][hapmap];0.87[MKK][hapmap]
rs7800379	0.83[ASW][hapmap];0.85[LWK][hapmap];0.87[MKK][hapmap]

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116674200-116685400	Weak transcription	HMEC	breast
2	chr7:116674800-116686000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr7:116675400-116685400	Weak transcription	Left Ventricle	heart
4	chr7:116675400-116691800	Weak transcription	Ovary	ovary
5	chr7:116676400-116687400	Weak transcription	Fetal Stomach	stomach
6	chr7:116676400-116688600	Weak transcription	Psoas Muscle	Psoas
7	chr7:116676600-116685000	Weak transcription	K562	blood
8	chr7:116676600-116688400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr7:116676800-116687600	Weak transcription	Fetal Lung	lung
10	chr7:116677000-116685800	Weak transcription	Colon Smooth Muscle	Colon
11	chr7:116677000-116688200	Weak transcription	Small Intestine	intestine
12	chr7:116677200-116685800	Weak transcription	Fetal Heart	heart
13	chr7:116677200-116686400	Weak transcription	Fetal Brain Female	brain
14	chr7:116677200-116691200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:116677400-116686200	Weak transcription	Fetal Muscle Leg	muscle
16	chr7:116677400-116686600	Weak transcription	Fetal Brain Male	brain
17	chr7:116677600-116685600	Weak transcription	Brain Hippocampus Middle	brain
18	chr7:116677600-116691400	Weak transcription	Aorta	Aorta
19	chr7:116678800-116687200	Weak transcription	Brain Germinal Matrix	brain
20	chr7:116680200-116684800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr7:116681200-116687600	Weak transcription	NHLF	lung
22	chr7:116682200-116685600	Weak transcription	GM12878-XiMat	blood
23	chr7:116682200-116685800	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr7:116682200-116686000	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr7:116682200-116690200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr7:116682200-116691400	Weak transcription	Osteobl	bone
27	chr7:116682800-116687600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr7:116683000-116686200	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr7:116683600-116687200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr7:116683800-116684800	Weak transcription	Right Ventricle	heart
31	chr7:116683800-116685800	Weak transcription	Rectal Smooth Muscle	rectum
32	chr7:116683800-116686800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr7:116683800-116687400	Weak transcription	Stomach Smooth Muscle	stomach
34	chr7:116683800-116687600	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr7:116684000-116685800	Weak transcription	HSMMtube	muscle
36	chr7:116684200-116685200	Enhancers	HepG2	liver
37	chr7:116684200-116687200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr7:116684200-116687200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr7:116684200-116687600	Weak transcription	Adipose Nuclei	Adipose
40	chr7:116684200-116689800	Weak transcription	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links