Variant report

Variant	rs2429032
Chromosome Location	chr7:116685621-116685622
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:116682586..116684476-chr7:116685425..116687752,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10230431	0.87[EUR][1000 genomes]
rs10260368	0.94[ASW][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.86[MEX][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17139184	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs17139270	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2428284	0.94[ASN][1000 genomes]
rs2428286	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2428289	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2428290	0.94[ASW][hapmap];0.89[LWK][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes]
rs2429044	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs35042045	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4074503	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4489259	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57283107	0.86[EUR][1000 genomes]
rs61673738	0.82[EUR][1000 genomes]
rs61690499	0.87[EUR][1000 genomes]
rs6466595	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6963873	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116674800-116686000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr7:116675400-116691800	Weak transcription	Ovary	ovary
3	chr7:116676400-116687400	Weak transcription	Fetal Stomach	stomach
4	chr7:116676400-116688600	Weak transcription	Psoas Muscle	Psoas
5	chr7:116676600-116688400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr7:116676800-116687600	Weak transcription	Fetal Lung	lung
7	chr7:116677000-116685800	Weak transcription	Colon Smooth Muscle	Colon
8	chr7:116677000-116688200	Weak transcription	Small Intestine	intestine
9	chr7:116677200-116685800	Weak transcription	Fetal Heart	heart
10	chr7:116677200-116686400	Weak transcription	Fetal Brain Female	brain
11	chr7:116677200-116691200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:116677400-116686200	Weak transcription	Fetal Muscle Leg	muscle
13	chr7:116677400-116686600	Weak transcription	Fetal Brain Male	brain
14	chr7:116677600-116691400	Weak transcription	Aorta	Aorta
15	chr7:116678800-116687200	Weak transcription	Brain Germinal Matrix	brain
16	chr7:116681200-116687600	Weak transcription	NHLF	lung
17	chr7:116682200-116685800	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr7:116682200-116686000	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr7:116682200-116690200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr7:116682200-116691400	Weak transcription	Osteobl	bone
21	chr7:116682800-116687600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr7:116683000-116686200	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr7:116683600-116687200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr7:116683800-116685800	Weak transcription	Rectal Smooth Muscle	rectum
25	chr7:116683800-116686800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr7:116683800-116687400	Weak transcription	Stomach Smooth Muscle	stomach
27	chr7:116683800-116687600	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr7:116684000-116685800	Weak transcription	HSMMtube	muscle
29	chr7:116684200-116687200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr7:116684200-116687200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr7:116684200-116687600	Weak transcription	Adipose Nuclei	Adipose
32	chr7:116684200-116689800	Weak transcription	NHDF-Ad	bronchial
33	chr7:116684800-116686400	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr7:116685000-116687000	Enhancers	K562	blood
35	chr7:116685000-116687800	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr7:116685200-116686200	Weak transcription	Pancreas	Pancrea
37	chr7:116685200-116688600	Weak transcription	HepG2	liver
38	chr7:116685200-116688800	Weak transcription	Right Ventricle	heart
39	chr7:116685400-116686400	Enhancers	HMEC	breast
40	chr7:116685600-116685800	Enhancers	Brain Hippocampus Middle	brain
41	chr7:116685600-116686000	Enhancers	Liver	Liver
42	chr7:116685600-116686000	Weak transcription	Left Ventricle	heart
43	chr7:116685600-116687000	Enhancers	GM12878-XiMat	blood

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