Variant report

Variant	rs17139270
Chromosome Location	chr7:116678639-116678640
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:116662894..116664584-chr7:116677550..116680143,2	K562	blood:
2	chr7:116672280..116675361-chr7:116676382..116679196,6	K562	blood:
3	chr7:116673925..116679714-chr7:116680423..116685011,12	K562	blood:
4	chr7:116657348..116659036-chr7:116675681..116678662,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10230431	0.90[EUR][1000 genomes]
rs10260368	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17139184	0.81[CEU][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2428284	0.96[ASN][1000 genomes]
rs2428286	1.00[ASW][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.96[ASN][1000 genomes]
rs2428289	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2429008	1.00[YRI][hapmap]
rs2429032	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2429044	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[ASN][1000 genomes]
rs35042045	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4074503	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4489259	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57283107	0.89[EUR][1000 genomes]
rs61673738	0.85[EUR][1000 genomes]
rs61690499	0.90[EUR][1000 genomes]
rs6466595	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6963873	0.83[ASN][1000 genomes]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116665800-116680600	Weak transcription	Osteobl	bone
2	chr7:116666200-116680400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:116667000-116681000	Weak transcription	NH-A	brain
4	chr7:116667200-116680800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr7:116671600-116680200	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr7:116674200-116681000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr7:116674200-116685400	Weak transcription	HMEC	breast
8	chr7:116674800-116686000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr7:116675000-116680000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr7:116675200-116683200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr7:116675400-116680600	Weak transcription	NHDF-Ad	bronchial
12	chr7:116675400-116680800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr7:116675400-116685400	Weak transcription	Left Ventricle	heart
14	chr7:116675400-116691800	Weak transcription	Ovary	ovary
15	chr7:116676400-116687400	Weak transcription	Fetal Stomach	stomach
16	chr7:116676400-116688600	Weak transcription	Psoas Muscle	Psoas
17	chr7:116676600-116685000	Weak transcription	K562	blood
18	chr7:116676600-116688400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr7:116676800-116687600	Weak transcription	Fetal Lung	lung
20	chr7:116677000-116685800	Weak transcription	Colon Smooth Muscle	Colon
21	chr7:116677000-116688200	Weak transcription	Small Intestine	intestine
22	chr7:116677200-116679400	Weak transcription	Pancreas	Pancrea
23	chr7:116677200-116683600	Weak transcription	HSMMtube	muscle
24	chr7:116677200-116685800	Weak transcription	Fetal Heart	heart
25	chr7:116677200-116686400	Weak transcription	Fetal Brain Female	brain
26	chr7:116677200-116691200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr7:116677400-116681800	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr7:116677400-116686200	Weak transcription	Fetal Muscle Leg	muscle
29	chr7:116677400-116686600	Weak transcription	Fetal Brain Male	brain
30	chr7:116677600-116681200	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr7:116677600-116683400	Weak transcription	Stomach Smooth Muscle	stomach
32	chr7:116677600-116685600	Weak transcription	Brain Hippocampus Middle	brain
33	chr7:116677600-116691400	Weak transcription	Aorta	Aorta
34	chr7:116678000-116678800	Enhancers	Brain Germinal Matrix	brain
35	chr7:116678400-116680400	Strong transcription	GM12878-XiMat	blood

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