Variant report

Variant	rs2429008
Chromosome Location	chr7:116731388-116731389
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	7:116728195-116740907..7:117341506-117356953	Hela-S3	cervix:
2	7:116580605-116585719..7:116728195-116740907	GM12878	blood:
3	chr7:116731236..116733598-chr7:116735179..116739600,3	K562	blood:

Variant related genes	Relation type
ENSG00000001626	Chromatin interaction
ENSG00000222150	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10230431	0.80[ASN][1000 genomes]
rs17139184	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17139270	1.00[YRI][hapmap]
rs17139364	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17139368	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2428286	1.00[YRI][hapmap]
rs2429010	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2429035	0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2429044	1.00[YRI][hapmap]
rs57283107	0.83[ASN][1000 genomes]
rs61673738	0.83[ASN][1000 genomes]
rs61690499	0.80[ASN][1000 genomes]

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116715800-116731800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr7:116717200-116744400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr7:116717400-116736200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:116723000-116738000	Weak transcription	NHLF	lung
5	chr7:116723200-116738000	Weak transcription	Ovary	ovary
6	chr7:116724200-116744200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr7:116724400-116731800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr7:116724400-116750400	Weak transcription	Fetal Lung	lung
9	chr7:116725400-116766400	Weak transcription	Brain Germinal Matrix	brain
10	chr7:116726200-116736200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr7:116727200-116738000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr7:116727800-116737600	Weak transcription	HepG2	liver
13	chr7:116728200-116731800	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr7:116728200-116731800	Weak transcription	NHDF-Ad	bronchial
15	chr7:116728200-116732000	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr7:116728200-116738000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr7:116728200-116738000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr7:116728200-116738000	Weak transcription	HSMMtube	muscle
19	chr7:116728200-116738200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr7:116728200-116738200	Weak transcription	Spleen	Spleen
21	chr7:116728200-116741000	Weak transcription	Fetal Muscle Leg	muscle
22	chr7:116728200-116750600	Weak transcription	Small Intestine	intestine
23	chr7:116728400-116731800	Strong transcription	GM12878-XiMat	blood
24	chr7:116728400-116732400	Weak transcription	Adipose Nuclei	Adipose
25	chr7:116728400-116732400	Weak transcription	HUVEC	blood vessel
26	chr7:116728400-116736200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr7:116729000-116734600	Weak transcription	Primary hematopoietic stem cells	blood
28	chr7:116729200-116732400	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr7:116729200-116732800	Weak transcription	Fetal Intestine Large	intestine
30	chr7:116729200-116738000	Weak transcription	Stomach Mucosa	stomach
31	chr7:116730200-116732000	Enhancers	Fetal Heart	heart
32	chr7:116730200-116733000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr7:116730400-116731400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr7:116730400-116731400	Enhancers	Psoas Muscle	Psoas
35	chr7:116730400-116732200	Enhancers	Fetal Intestine Small	intestine
36	chr7:116730400-116732200	Enhancers	Lung	lung
37	chr7:116730400-116732200	Enhancers	Right Ventricle	heart
38	chr7:116730400-116732200	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr7:116730400-116732200	Genic enhancers	K562	blood
40	chr7:116730400-116732400	Enhancers	Left Ventricle	heart
41	chr7:116730400-116732400	Enhancers	Pancreas	Pancrea
42	chr7:116730600-116731800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr7:116730600-116738200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr7:116730600-116738200	Weak transcription	Brain Anterior Caudate	brain
45	chr7:116730800-116732000	Enhancers	Gastric	stomach
46	chr7:116730800-116732600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr7:116731000-116731400	Enhancers	Colon Smooth Muscle	Colon
48	chr7:116731000-116731400	Enhancers	Fetal Brain Female	brain
49	chr7:116731000-116732000	Enhancers	Brain Angular Gyrus	brain
50	chr7:116731000-116738400	Weak transcription	Stomach Smooth Muscle	stomach

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