Variant report

Variant	rs2428286
Chromosome Location	chr7:116705853-116705854
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:116703686..116706153-chr7:116708300..116710896,2	K562	blood:
2	chr7:116701593..116703694-chr7:116704475..116707125,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10260368	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17139184	1.00[YRI][hapmap]
rs17139270	1.00[ASW][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.96[ASN][1000 genomes]
rs2428284	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2428289	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2429008	1.00[YRI][hapmap]
rs2429032	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2429035	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2429044	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35042045	0.82[ASN][1000 genomes]
rs4074503	0.82[ASN][1000 genomes]
rs4489259	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6466595	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116686800-116712400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:116690600-116711600	Weak transcription	K562	blood
3	chr7:116693800-116709000	Weak transcription	Right Atrium	heart
4	chr7:116700400-116709000	Weak transcription	Aorta	Aorta
5	chr7:116701800-116707000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr7:116702200-116712600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr7:116702400-116707400	Weak transcription	Brain Germinal Matrix	brain
8	chr7:116702400-116707400	Weak transcription	Psoas Muscle	Psoas
9	chr7:116702400-116708600	Weak transcription	Pancreas	Pancrea
10	chr7:116702400-116708800	Weak transcription	Left Ventricle	heart
11	chr7:116702400-116711600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr7:116702400-116711600	Weak transcription	HMEC	breast
13	chr7:116702400-116712800	Weak transcription	Gastric	stomach
14	chr7:116702400-116712800	Weak transcription	HSMMtube	muscle
15	chr7:116702600-116707000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr7:116702600-116707000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr7:116702600-116708600	Weak transcription	HSMM	muscle
18	chr7:116703000-116707000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr7:116703000-116707200	Weak transcription	Fetal Heart	heart
20	chr7:116703000-116708600	Weak transcription	NH-A	brain
21	chr7:116703000-116712800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr7:116703200-116706800	Weak transcription	Osteobl	bone
23	chr7:116703200-116707200	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr7:116704800-116708600	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr7:116704800-116712400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr7:116705000-116706000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr7:116705200-116708600	Weak transcription	Brain Angular Gyrus	brain
28	chr7:116705400-116706000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr7:116705400-116706200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr7:116705600-116706200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr7:116705600-116706200	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr7:116705600-116706200	Enhancers	NHEK	skin
33	chr7:116705600-116706400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr7:116705600-116706400	Enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr7:116705600-116706400	Enhancers	Colon Smooth Muscle	Colon
36	chr7:116705600-116708000	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr7:116705800-116706000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
38	chr7:116705800-116706000	Enhancers	Brain Anterior Caudate	brain
39	chr7:116705800-116706000	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr7:116705800-116706200	Enhancers	ES-I3 Cell Line	embryonic stem cell
41	chr7:116705800-116706200	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr7:116705800-116707600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr7:116705800-116708200	Enhancers	Monocytes-CD14+_RO01746	blood
44	chr7:116705800-116709000	Enhancers	GM12878-XiMat	blood
45	chr7:116705800-116709200	Enhancers	Primary monocytes fromperipheralblood	blood

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