Variant report

Variant	rs2429035
Chromosome Location	chr7:116693742-116693743
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:116683661..116685296-chr7:116691714..116693908,2	K562	blood:

rs_ID	r²[population]
rs10230431	0.85[ASN][1000 genomes]
rs10260368	0.95[EUR][1000 genomes]
rs17139184	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17139364	0.80[ASN][1000 genomes]
rs17139368	0.80[ASN][1000 genomes]
rs2428284	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2428286	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2429008	0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2429010	0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2429044	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57283107	0.87[ASN][1000 genomes]
rs61673738	0.87[ASN][1000 genomes]
rs61690499	0.85[ASN][1000 genomes]

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116686600-116701200	Weak transcription	HSMMtube	muscle
2	chr7:116686800-116712400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:116688000-116694600	Weak transcription	Brain Germinal Matrix	brain
4	chr7:116688000-116697000	Weak transcription	Fetal Lung	lung
5	chr7:116690600-116701200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:116690600-116711600	Weak transcription	K562	blood
7	chr7:116691200-116694400	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr7:116691800-116702000	Weak transcription	Pancreas	Pancrea
9	chr7:116692000-116696200	Weak transcription	Spleen	Spleen
10	chr7:116692200-116702000	Weak transcription	Psoas Muscle	Psoas
11	chr7:116692400-116704600	Weak transcription	GM12878-XiMat	blood
12	chr7:116693000-116694800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr7:116693200-116693800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr7:116693200-116693800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr7:116693200-116694600	Enhancers	Brain Angular Gyrus	brain
16	chr7:116693400-116693800	Enhancers	H9 Cell Line	embryonic stem cell
17	chr7:116693400-116693800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr7:116693400-116693800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr7:116693400-116693800	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr7:116693400-116693800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
21	chr7:116693400-116693800	Enhancers	Lung	lung
22	chr7:116693400-116693800	Enhancers	Ovary	ovary
23	chr7:116693400-116693800	Enhancers	Right Atrium	heart
24	chr7:116693400-116693800	Enhancers	NHDF-Ad	bronchial
25	chr7:116693400-116693800	Enhancers	Osteobl	bone
26	chr7:116693400-116694000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr7:116693400-116694600	Enhancers	Brain Anterior Caudate	brain
28	chr7:116693400-116694600	Enhancers	Left Ventricle	heart
29	chr7:116693400-116694600	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr7:116693400-116694800	Enhancers	Aorta	Aorta
31	chr7:116693600-116693800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr7:116693600-116693800	Enhancers	Muscle Satellite Cultured Cells	--
33	chr7:116693600-116693800	Enhancers	Brain Hippocampus Middle	brain
34	chr7:116693600-116693800	Enhancers	Brain Substantia Nigra	brain
35	chr7:116693600-116693800	Enhancers	Right Ventricle	heart
36	chr7:116693600-116701200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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