Variant report

Variant	rs7800379
Chromosome Location	chr7:116680679-116680680
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:116673925..116679714-chr7:116680423..116685011,12	K562	blood:
2	chr7:116679339..116680881-chr7:116689346..116692330,2	K562	blood:
3	chr7:116679104..116680749-chr7:116738557..116740064,2	K562	blood:

Variant related genes	Relation type
ENSG00000004866	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10260368	0.83[ASW][hapmap];0.81[LWK][hapmap]
rs11771917	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12539753	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12669881	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12672783	0.84[ASN][1000 genomes]
rs2428290	0.83[ASW][hapmap];0.85[LWK][hapmap];0.87[MKK][hapmap]
rs35057858	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3864652	0.91[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs4236605	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4489259	0.83[ASW][hapmap]
rs55840193	0.83[ASN][1000 genomes]
rs60715492	0.86[ASN][1000 genomes]
rs7785492	0.81[ASW][hapmap];0.91[CHB][hapmap];0.83[CHD][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs7788320	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7800379	ANKRD7	cis	cerebellum	SCAN

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116667000-116681000	Weak transcription	NH-A	brain
2	chr7:116667200-116680800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr7:116674200-116681000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:116674200-116685400	Weak transcription	HMEC	breast
5	chr7:116674800-116686000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr7:116675200-116683200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr7:116675400-116680800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr7:116675400-116685400	Weak transcription	Left Ventricle	heart
9	chr7:116675400-116691800	Weak transcription	Ovary	ovary
10	chr7:116676400-116687400	Weak transcription	Fetal Stomach	stomach
11	chr7:116676400-116688600	Weak transcription	Psoas Muscle	Psoas
12	chr7:116676600-116685000	Weak transcription	K562	blood
13	chr7:116676600-116688400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr7:116676800-116687600	Weak transcription	Fetal Lung	lung
15	chr7:116677000-116685800	Weak transcription	Colon Smooth Muscle	Colon
16	chr7:116677000-116688200	Weak transcription	Small Intestine	intestine
17	chr7:116677200-116683600	Weak transcription	HSMMtube	muscle
18	chr7:116677200-116685800	Weak transcription	Fetal Heart	heart
19	chr7:116677200-116686400	Weak transcription	Fetal Brain Female	brain
20	chr7:116677200-116691200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr7:116677400-116681800	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr7:116677400-116686200	Weak transcription	Fetal Muscle Leg	muscle
23	chr7:116677400-116686600	Weak transcription	Fetal Brain Male	brain
24	chr7:116677600-116681200	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr7:116677600-116683400	Weak transcription	Stomach Smooth Muscle	stomach
26	chr7:116677600-116685600	Weak transcription	Brain Hippocampus Middle	brain
27	chr7:116677600-116691400	Weak transcription	Aorta	Aorta
28	chr7:116678800-116687200	Weak transcription	Brain Germinal Matrix	brain
29	chr7:116680000-116683800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr7:116680200-116681200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr7:116680200-116684800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr7:116680400-116681400	Genic enhancers	GM12878-XiMat	blood
33	chr7:116680400-116681600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr7:116680600-116681000	Enhancers	NHDF-Ad	bronchial
35	chr7:116680600-116682200	Enhancers	Osteobl	bone

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