Variant report

Variant	rs4236605
Chromosome Location	chr7:116673534-116673535
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:116655560..116657072-chr7:116673244..116674855,2	K562	blood:
2	chr7:116672280..116675361-chr7:116676382..116679196,6	K562	blood:
3	chr7:116666668..116671169-chr7:116672583..116677847,7	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11771917	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12539753	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12669881	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12672783	0.84[ASN][1000 genomes]
rs35057858	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3864652	0.83[ASN][1000 genomes]
rs55840193	0.83[ASN][1000 genomes]
rs60715492	0.86[ASN][1000 genomes]
rs7785492	0.83[ASN][1000 genomes]
rs7788320	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7800379	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116662000-116675200	Weak transcription	Fetal Stomach	stomach
2	chr7:116665800-116680600	Weak transcription	Osteobl	bone
3	chr7:116666200-116680400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:116666800-116673800	Weak transcription	Pancreas	Pancrea
5	chr7:116667000-116673800	Weak transcription	Right Atrium	heart
6	chr7:116667000-116674000	Weak transcription	HUVEC	blood vessel
7	chr7:116667000-116681000	Weak transcription	NH-A	brain
8	chr7:116667200-116676000	Weak transcription	K562	blood
9	chr7:116667200-116680800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr7:116669400-116674400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr7:116671400-116674800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr7:116671600-116674600	Weak transcription	Fetal Lung	lung
13	chr7:116671600-116674800	Weak transcription	NHDF-Ad	bronchial
14	chr7:116671600-116675200	Weak transcription	Brain Hippocampus Middle	brain
15	chr7:116671600-116676000	Weak transcription	Fetal Heart	heart
16	chr7:116671600-116676200	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr7:116671600-116676200	Weak transcription	Brain Substantia Nigra	brain
18	chr7:116671600-116676200	Weak transcription	Fetal Brain Male	brain
19	chr7:116671600-116677000	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr7:116671600-116677000	Weak transcription	GM12878-XiMat	blood
21	chr7:116671600-116680200	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr7:116672200-116676200	Weak transcription	Psoas Muscle	Psoas
23	chr7:116673000-116674000	Weak transcription	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links