Variant report

Variant	rs3864652
Chromosome Location	chr7:116716598-116716599
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr7:116716365-116716742	HepG2	liver:	n/a	n/a
2	FOXA1	chr7:116716335-116716821	HepG2	liver:	n/a	n/a
3	FOXA1	chr7:116716246-116716822	HepG2	liver:	n/a	n/a
4	FOXA1	chr7:116716376-116716858	HepG2	liver:	n/a	n/a
5	FOXA2	chr7:116716449-116716779	A549	lung:	n/a	n/a
6	FOXA2	chr7:116716342-116716652	HepG2	liver:	n/a	n/a
7	FOXA2	chr7:116716403-116716796	A549	lung:	n/a	n/a

Variant related genes	Relation type
ST7-AS2	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11771917	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs4236605	0.83[ASN][1000 genomes]
rs60715492	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7785492	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7788320	0.91[CHB][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs7800379	0.91[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116711600-116718200	Enhancers	Fetal Heart	heart
2	chr7:116712000-116724200	Weak transcription	K562	blood
3	chr7:116713000-116716600	Weak transcription	Fetal Stomach	stomach
4	chr7:116713200-116716600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr7:116713200-116716600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr7:116713200-116716600	Weak transcription	Esophagus	oesophagus
7	chr7:116713200-116716600	Weak transcription	Left Ventricle	heart
8	chr7:116713200-116716600	Weak transcription	Lung	lung
9	chr7:116713200-116717000	Weak transcription	Fetal Brain Male	brain
10	chr7:116713200-116723800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr7:116713200-116723800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr7:116713200-116723800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr7:116713200-116723800	Weak transcription	Brain Angular Gyrus	brain
14	chr7:116713200-116730800	Weak transcription	Aorta	Aorta
15	chr7:116713400-116717600	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr7:116713400-116721000	Weak transcription	HUVEC	blood vessel
17	chr7:116713600-116716600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr7:116713600-116716600	Weak transcription	Brain Substantia Nigra	brain
19	chr7:116714000-116717200	Weak transcription	Stomach Mucosa	stomach
20	chr7:116714600-116723400	Weak transcription	Gastric	stomach
21	chr7:116715400-116716800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr7:116715400-116717400	Enhancers	Right Ventricle	heart
23	chr7:116715400-116717400	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr7:116715600-116717200	ZNF genes & repeats	GM12878-XiMat	blood
25	chr7:116715600-116719200	Enhancers	Liver	Liver
26	chr7:116715800-116731800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr7:116716000-116716800	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr7:116716000-116717200	Enhancers	Right Atrium	heart
29	chr7:116716200-116716600	Enhancers	HepG2	liver
30	chr7:116716200-116717400	Enhancers	Pancreas	Pancrea
31	chr7:116716400-116716600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
32	chr7:116716400-116716600	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr7:116716400-116716800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr7:116716400-116716800	Enhancers	Brain Anterior Caudate	brain
35	chr7:116716400-116717000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr7:116716400-116717000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
37	chr7:116716400-116717000	Enhancers	Psoas Muscle	Psoas
38	chr7:116716400-116717400	Enhancers	Brain Inferior Temporal Lobe	brain

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