Variant report

Variant	rs2434308
Chromosome Location	chr5:79300895-79300896
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12054697	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs2434307	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2434309	0.89[AFR][1000 genomes]
rs2434310	0.89[AFR][1000 genomes]
rs2434316	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2438616	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432748	chr5:79300434-79577760	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79287600-79311400	Weak transcription	Aorta	Aorta
2	chr5:79288000-79303200	Weak transcription	Pancreas	Pancrea
3	chr5:79288000-79311000	Weak transcription	Ovary	ovary
4	chr5:79288200-79310400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr5:79288200-79311800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr5:79292000-79315600	Weak transcription	HSMMtube	muscle
7	chr5:79296000-79302000	Weak transcription	NHEK	skin
8	chr5:79296800-79306400	Weak transcription	Psoas Muscle	Psoas
9	chr5:79298200-79308600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:79300000-79304800	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr5:79300200-79302000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr5:79300200-79304400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr5:79300400-79304000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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