Variant report

Variant	rs2434316
Chromosome Location	chr5:79303948-79303949
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-THBS4-4	chr5:79294156-79304207	NONHSAT102380

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs16877379	0.81[JPT][hapmap]
rs2434270	0.86[ASN][1000 genomes]
rs2434272	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2434273	0.86[ASN][1000 genomes]
rs2434274	0.86[ASN][1000 genomes]
rs2434275	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2434307	0.82[ASN][1000 genomes]
rs2434308	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2434309	0.91[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2434310	0.91[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2434314	0.81[CHB][hapmap]
rs2434318	0.86[ASN][1000 genomes]
rs2434319	0.86[ASN][1000 genomes]
rs2438609	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2438610	0.80[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2438611	0.84[ASN][1000 genomes]
rs2438612	0.86[ASN][1000 genomes]
rs2438613	0.84[ASN][1000 genomes]
rs2438614	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2438615	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2438616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2438617	0.87[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2438618	0.89[ASN][1000 genomes]
rs2438650	0.80[YRI][hapmap]
rs2438651	0.84[ASN][1000 genomes]
rs2451933	0.90[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2451940	0.87[CHB][hapmap];0.86[ASN][1000 genomes]
rs256440	0.81[ASW][hapmap];0.82[CHD][hapmap];0.84[LWK][hapmap];0.80[YRI][hapmap]
rs256444	0.81[ASW][hapmap];0.82[CHD][hapmap];0.84[LWK][hapmap];0.80[YRI][hapmap]
rs256447	0.81[ASW][hapmap];0.81[CHD][hapmap];0.84[LWK][hapmap];0.80[YRI][hapmap]
rs256450	0.86[ASN][1000 genomes]
rs256451	0.83[ASN][1000 genomes]
rs366471	0.84[ASN][1000 genomes]
rs385771	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs423906	0.87[ASW][hapmap];0.84[LWK][hapmap];0.80[YRI][hapmap]
rs6874832	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432748	chr5:79300434-79577760	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79287600-79311400	Weak transcription	Aorta	Aorta
2	chr5:79288000-79311000	Weak transcription	Ovary	ovary
3	chr5:79288200-79310400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr5:79288200-79311800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr5:79292000-79315600	Weak transcription	HSMMtube	muscle
6	chr5:79296800-79306400	Weak transcription	Psoas Muscle	Psoas
7	chr5:79298200-79308600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:79300000-79304800	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr5:79300200-79304400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr5:79300400-79304000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr5:79301600-79311200	Weak transcription	Right Ventricle	heart
12	chr5:79302600-79305800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr5:79303600-79304800	Weak transcription	Pancreas	Pancrea

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