Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs2434270	0.84[ASN][1000 genomes]
rs2434272	0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2434273	0.84[ASN][1000 genomes]
rs2434274	0.84[ASN][1000 genomes]
rs2434275	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2434308	0.83[AFR][1000 genomes]
rs2434309	0.91[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2434310	0.91[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2434316	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2434318	0.84[ASN][1000 genomes]
rs2434319	0.84[ASN][1000 genomes]
rs2438609	0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2438610	0.80[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2438611	0.87[ASN][1000 genomes]
rs2438612	0.84[ASN][1000 genomes]
rs2438613	0.87[ASN][1000 genomes]
rs2438614	0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2438615	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2438617	0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2438618	0.87[ASN][1000 genomes]
rs2438651	0.81[ASN][1000 genomes]
rs2451933	0.90[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2451940	0.84[ASN][1000 genomes]
rs256450	0.84[ASN][1000 genomes]
rs256451	0.86[ASN][1000 genomes]
rs366471	0.87[ASN][1000 genomes]
rs385771	0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs6874832	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432748	chr5:79300434-79577760	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79287600-79311400	Weak transcription	Aorta	Aorta
2	chr5:79288000-79311000	Weak transcription	Ovary	ovary
3	chr5:79288200-79310400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr5:79288200-79311800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr5:79292000-79315600	Weak transcription	HSMMtube	muscle
6	chr5:79296800-79306400	Weak transcription	Psoas Muscle	Psoas
7	chr5:79298200-79308600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:79300000-79304800	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr5:79300200-79304400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr5:79301600-79311200	Weak transcription	Right Ventricle	heart
11	chr5:79302600-79305800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr5:79303600-79304800	Weak transcription	Pancreas	Pancrea

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