Variant report

No.	Distal block	Cell Line	Cell type
1	chr8:103638730..103642072-chr8:103644705..103647673,4	MCF-7	breast:
2	chr8:103635452..103642989-chr8:103815632..103824530,15	MCF-7	breast:
3	chr8:103640384..103642627-chr8:103667013..103669617,2	K562	blood:
4	chr8:103639826..103643166-chr8:103658941..103661983,3	K562	blood:
5	chr8:103602402..103604318-chr8:103640333..103643151,2	K562	blood:
6	chr8:103640822..103642604-chr8:103804689..103806588,2	MCF-7	breast:
7	chr8:103640597..103642140-chr8:103817806..103819338,2	K562	blood:

Variant related genes	Relation type
ENSG00000253669	Chromatin interaction
ENSG00000155090	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs2436928	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2436951	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2436952	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2436955	0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2436956	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2436957	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2436959	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2436960	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2436962	0.89[ASN][1000 genomes]
rs2436963	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2436964	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2436965	0.93[ASN][1000 genomes]
rs2436967	0.93[ASN][1000 genomes]
rs2436969	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2511656	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2511659	0.93[ASN][1000 genomes]
rs2511661	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2511663	0.98[ASN][1000 genomes]
rs2511666	0.94[ASN][1000 genomes]
rs66485119	0.93[ASN][1000 genomes]
rs7840069	0.81[ASN][1000 genomes]
rs873780	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1028329	chr8:103574775-103684362	Strong transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103622800-103646400	Weak transcription	Psoas Muscle	Psoas
2	chr8:103635000-103646600	Weak transcription	Right Atrium	heart
3	chr8:103637200-103642400	Enhancers	Placenta	Placenta
4	chr8:103640000-103646600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr8:103640200-103645200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr8:103640400-103642200	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr8:103640400-103642400	Enhancers	Fetal Heart	heart
8	chr8:103640600-103644600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr8:103640600-103646400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr8:103640800-103642000	Weak transcription	Right Ventricle	heart
11	chr8:103640800-103646600	Weak transcription	Fetal Stomach	stomach
12	chr8:103641200-103642000	Weak transcription	Left Ventricle	heart
13	chr8:103641200-103642200	Enhancers	Liver	Liver
14	chr8:103641200-103644400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr8:103641200-103644600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

Quick Search: