Variant report

Variant	rs2511661
Chromosome Location	chr8:103642474-103642475
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:103627950..103630144-chr8:103642209..103643784,2	MCF-7	breast:
2	chr8:103634398..103637775-chr8:103642367..103645250,3	K562	blood:
3	chr8:103635452..103642989-chr8:103815632..103824530,15	MCF-7	breast:
4	chr8:103640384..103642627-chr8:103667013..103669617,2	K562	blood:
5	chr8:103639826..103643166-chr8:103658941..103661983,3	K562	blood:
6	chr8:103602402..103604318-chr8:103640333..103643151,2	K562	blood:
7	chr8:103640822..103642604-chr8:103804689..103806588,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253669	Chromatin interaction
ENSG00000253382	Chromatin interaction
ENSG00000155090	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs2436928	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2436951	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2436952	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2436955	0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2436956	0.88[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2436957	0.88[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2436958	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2436959	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2436960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2436962	0.89[ASN][1000 genomes]
rs2436963	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2436964	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2436965	0.93[ASN][1000 genomes]
rs2436967	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs2436969	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2511656	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2511659	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2511663	0.84[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2511666	0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2511722	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap]
rs66485119	0.93[ASN][1000 genomes]
rs6981411	0.93[CHB][hapmap];0.88[JPT][hapmap]
rs7840069	0.81[ASN][1000 genomes]
rs873780	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1028329	chr8:103574775-103684362	Strong transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103622800-103646400	Weak transcription	Psoas Muscle	Psoas
2	chr8:103635000-103646600	Weak transcription	Right Atrium	heart
3	chr8:103640000-103646600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr8:103640200-103645200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr8:103640600-103644600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr8:103640600-103646400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr8:103640800-103646600	Weak transcription	Fetal Stomach	stomach
8	chr8:103641200-103644400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr8:103641200-103644600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr8:103642200-103642600	Weak transcription	Left Ventricle	heart
11	chr8:103642400-103644400	Weak transcription	Placenta	Placenta

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